Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0193 ATGATAATGGTTTCTTTCCTTTGCTACTACTATTGTGGTAATAATGGTGATAAACCAGACTTGAATGGATTAGACACCGAAGAAGGTGGTGGTGGAGGATGTTTAACAGATTACTCTACAAGCAGTGTAGGATCAAGAACACCTTCATCTTCAAGAGCAAGCACTTCTGATTCTGAGGCTCTACCAGGWAGTGGTGGTTCCAATGCTAACAACCAATGGCGTGGTTTCTTCAAGCTTCTCAAGAAAGGCTCACAGATGCCATTTCAACCATTTCACCCTCTTAAGAAGAATGTTCCTAAGTTAACTAGAAGGAAGAGTAAGAGGGTTAGAGAGGATCTCATTCCTTCTTCTTTTGACTCTGAGTTTGCCAACTTCAAATCTTCATGGAAGAATTTCACTCTCTCTGAACTCCAGGCTGCAACTGATGACTTCAGCCATGATAATGTGATTGGGGAGGGAGGGTATGCAGAGGTATACTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCATAAAGAAGCTTACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTTTTGTCTGAGCTTGGAATCATAGTTCATGTGGACCATCCAAACATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTCCTTGTTCTTCAGCTCTCTCCACATGGCAGCTTATCATCCATACTTTATGGGCCTAGAGAGAAGCTCAATTGGAGTCTCAGATTTAAGATTATTTTGGGAACTGCCGAGGGACTTTGCTATCTTCATGAGGGATGTCAAAGAAGAATCATTCACAAGGATATCAAGGCTTCTAATATTCTTCTCTCTGAGACTTTTGAGCCTCAGATATCTGATTTTGGCCTAGCAAAGTGGTTACCTGACCAATGGACTCACCATACTGTTTCCAAAGTAGAAGGCACATTCGGGTACCTTCCCCCTGAATTCTTCATGCATGGAATAGTAGATGAGAAAACTGATGTATATGCTTATGGTGTGCTATTATTGGAGCTAATCACTGGAAGACAAGCTTTGGATAGCTCACAAAAAAGTCTTATCATGTGGGCAAAGCCTTTGTTAATTGCAAACAACATAAAAGAGCTTGTTGATCCAGTTCTTGAAGACAATTATGATGAAGAGCAGATGGACCTAGTGATCTTAACAGCATCTCAGTGTGTAGAACAATCGTCGGCTCAACGGCCTCTTATGAGTGAGGTGCTACAAATATTAAGAGGGGATGAAGAGAGCTTGAAGTGCATGAAAGAAAGACAAAAGTCAAAAATTCAAAGAACATACTCTGAAGAACTGTTAGATGCAAATGAATACAATTCAACTAAGTATTTGAGTGAGAGTCAGAGCCAAAGAGCACGCCATATGGAGTTTATTCTAAGCAGTAACTCACCCACACAAGAAACGGAACAAAATTGA 1425 0.4049 MIMVSFLCYYYCGNNGDKPDLNGLDTEEGGGGGCLTDYSTSSVGSRTPSSSRASTSDSEALPGSGGSNANNQWRGFFKLLKKGSQMPFQPFHPLKKNVPKLTRRKSKRVREDLIPSSFDSEFANFKSSWKNFTLSELQAATDDFSHDNVIGEGGYAEVYLGKLEDGNFVAIKKLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIILGTAEGLCYLHEGCQRRIIHKDIKASNILLSETFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLIMWAKPLLIANNIKELVDPVLEDNYDEEQMDLVILTASQCVEQSSAQRPLMSEVLQILRGDEESLKCMKERQKSKIQRTYSEELLDANEYNSTKYLSESQSQRARHMEFILSSNSPTQETEQN* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0193 474 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 49 447 - -
Amo19g0193 474 Gene3D Phosphorylase Kinase; domain 1 117 218 - -
Amo19g0193 474 Gene3D Transferase(Phosphotransferase) domain 1 221 437 - -
Amo19g0193 474 SUPERFAMILY Protein kinase-like (PK-like) 129 439 IPR011009 -
Amo19g0193 474 SMART serkin_6 144 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g0193 474 PANTHER OS08G0249100 PROTEIN 49 447 - -
Amo19g0193 474 Pfam Protein tyrosine and serine/threonine kinase 147 408 IPR001245 GO:0004672|GO:0006468
Amo19g0193 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Amo19g0193 474 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Amo19g0193 474 MobiDBLite consensus disorder prediction 35 69 - -
Amo19g0193 474 ProSiteProfiles Protein kinase domain profile. 144 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0193 Amo-Chr19 2206479 2208731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0193 112 453 Trihelix Transcription Factor Family AT5G38560 39.286 1.45e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo19g0193 PK_Tyr_Ser-Thr 2.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0193 - - gmx:100776081 711.064