Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0178 ATGGAGGAGTCAGGGGAAAATTGGCCTTCGGATTCTGATTTGGAAATGGGTGATGATGACAATAATAATGATTATTGTTATGATGATGAAGAAGAATTGGGTTGTGATGAAGAGATTCAATATTTTGCTGAAGAAGAAGCTTTAGATCCTATTATGGATGAGACCCAAAGGAAGAAGAAACAAAGGGAACTTGAAGAGAGATTGCTTGCACTTTCAGCCACCATACCCAGTAGTGGCTTCAAGAATAACAAGATGGACGATAGATCAATCCTTGACAATGCTAGCAACTACGTGAAACAACTCCAACAACGTGTGAGGGAGCTAGAACAAGAAGTTGGTGGTGGATCCAACAACAACAAAGGTTCCACGTCTTATAATAACGAAGAAGTAAACTCTTATAATAGTAATAATAATAATTGTGATGAATTCTATTATGGAGAAGGTGGTGGCAATAATATTAATCTTCCTGAGGTCAAAGTAAGAGTGTTGCAAAACGAAGTGCTCATCATAATCCATTGTGAGAAACAAAAGGGTTTGATGCTCAAAATTCTAACAAAGCTTGAGAATCTTCATCTTTCGGTTCTCAATAACAGTGTCTTGCCATTTGGGAAATCAACCCTCGACATAACCATTGTTGCTCAGATGGGAGATAGATACAGCATGACAGTGAAGGAATTAGTGAAAACCCTGAGATTAACTATCTTGACACAATAG 714 0.3782 MEESGENWPSDSDLEMGDDDNNNDYCYDDEEELGCDEEIQYFAEEEALDPIMDETQRKKKQRELEERLLALSATIPSSGFKNNKMDDRSILDNASNYVKQLQQRVRELEQEVGGGSNNNKGSTSYNNEEVNSYNSNNNNCDEFYYGEGGGNNINLPEVKVRVLQNEVLIIIHCEKQKGLMLKILTKLENLHLSVLNNSVLPFGKSTLDITIVAQMGDRYSMTVKELVKTLRLTILTQ* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0178 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 114 IPR036638 GO:0046983
Amo19g0178 237 Coils Coil 91 118 - -
Amo19g0178 237 MobiDBLite consensus disorder prediction 1 28 - -
Amo19g0178 237 PANTHER PROTEIN, PUTATIVE-RELATED 47 237 - -
Amo19g0178 237 Gene3D - 53 118 IPR036638 GO:0046983
Amo19g0178 237 PANTHER BHLH TRANSCRIPTION FACTOR 47 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0178 Amo-Chr19 1929688 1933716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0178 47 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.683 1.51e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0178 - - aip:107616596 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0178 19 1929688 1933716 Amo09g0007 09 70674 75073 hybridization
Amo19g0178 19 1929688 1933716 Amo19g0175 19 1888882 1894087 PCT