Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0177 ATGTCTGAGAGGAAAAGGAGACAACAAATGGCTGAGAAGTTCATAGCACTTGCAGCTGCTATTCCTGGCTTGAAGAAGATAGACAAGGCATCTATACTTCAAGAAGCAATAAATTATGTGAAAGAACTTCAAGAACGCATAGCACTGCTTGAGAAAGAGAGCAACAACAAAGAACAATTGATTGTGAAAAAATCACAATTTTGTTGTTCTTCTCTGCCGTGTGACAAAAACAATAATGACAACAACATTGGTGGTAATGAAATGGTGCTACCAGAAGTGGAAGCTAGATTGTTAGAAAAGGAAGTACTAATTAGAATCCATTGTGAGAAACGAAATGGAATCATGTTGGAGCTCTTGGCATTTTTGGAAAATAATAATCTCTCTCTGGCTTGTAGCAGCTTCTTGCCATTTGGAAACTCTACTCTCAATGTTATCATCATTGCTCTGATGAACGAGGAATTCAACTTAACATTGAACGATCTGGTGAAGACGTTGAGGGAGTATCTTTTGAAGTTTATGAGATGCAATAATAATAATGGTGGTCCATGCTAG 552 0.375 MSERKRRQQMAEKFIALAAAIPGLKKIDKASILQEAINYVKELQERIALLEKESNNKEQLIVKKSQFCCSSLPCDKNNNDNNIGGNEMVLPEVEARLLEKEVLIRIHCEKRNGIMLELLAFLENNNLSLACSSFLPFGNSTLNVIIIALMNEEFNLTLNDLVKTLREYLLKFMRCNNNNGGPC* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0177 183 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 173 - -
Amo19g0177 183 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 57 IPR036638 GO:0046983
Amo19g0177 183 SMART finulus 1 49 IPR011598 GO:0046983
Amo19g0177 183 Pfam Helix-loop-helix DNA-binding domain 2 44 IPR011598 GO:0046983
Amo19g0177 183 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 43 IPR011598 GO:0046983
Amo19g0177 183 Coils Coil 33 60 - -
Amo19g0177 183 PANTHER BHLH TRANSCRIPTION FACTOR 1 173 - -
Amo19g0177 183 Gene3D - 1 67 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0177 Amo-Chr19 1912179 1915358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0177 1 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.000 8.80e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g0177 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0177 - - ahf:112712745 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0175 19 1888882 1894087 Amo19g0177 19 1912179 1915358 PCT
Amo19g0177 19 1912179 1915358 Amo19g0174 19 1872476 1876089 PCT