Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0174 ATGGGGGAGCCATGCCACAATTATTGGTACTCTGACATGGGGATCCAAGATGATGATATCTTCAGCCAACGTTACAAGATTAACTCATCACTAATTGTTGATGAAGATCATATCATTAGGGAGATCATGGATCATCATCATCATCACCAACCAGCTTTCTCATCTGAAAGTGATAATAGTCACTCTCCCACAAATAATAATCAAATCAAAGGTGGTGGAAGTGGCAATACTAGTAGCTTTGTGTTCAACAACAATAATCAACATGCACCATTATTGTTGGATATGAAAGCTTCTACTTCAACATCTTCTCCAAGATCATACATTCTATCTTTCCATGATTCCACCGTTATTGCCGCCACGGTGGCCGCCGCGGCTACTCCTCCTCCTCCTCCATCATTAGAAACCTATAATAACAATGGGAAACGACCATACCAACGCATTGAAGTGCCATTAGAAAATCAAGCAAAGAAGGTTAGAAGCTCCTCAGAGACAGTTGATCACATAATGACTGAGAGAAAAAGGAGAAGGGAATTAACTGAGAGATTCATAGCACTTTCAGCCACTATTCCTGGCTTGAAGAAGATTGACAAATCCACTATACTTAGCGAGGCAATAAGTCATGTGAAACAACTCAAACAACGAGTGAAGGAATTAGAAGAACAAAAGAAGAAGATAAGTGTAGAATCAGTGTCATTCATTATTAGGAAATCCCACCTCATGAATGGAACTAATAATAAGGATGATGAAAAAGGTGCAATCAATAATAAAGCAGCAACAAGTGAAGCACTACTCCCAACGGTGGAAGCAAGAGTGCTCAAAAATGATGTGCTAATAAGGATCCATTGCATGAAACAAAGTGGTATTATGCTCAAAATATTGCGACATCTTAAGAGTTTTGATCTCTCTGCCATTAGCAATAGTGTATTGCCATTTGGAAATTCCACTCTTGATATCACCATTATTGCTCAGATAGGTGACAAATTCAACGTGACAATGAATGATTTAGTGAAAAATCTGAGACTGTCTATCTTGGAGTCCCCTAATGATGATGAAGAACCACACAACAGTTATTGA 1074 0.3873 MGEPCHNYWYSDMGIQDDDIFSQRYKINSSLIVDEDHIIREIMDHHHHHQPAFSSESDNSHSPTNNNQIKGGGSGNTSSFVFNNNNQHAPLLLDMKASTSTSSPRSYILSFHDSTVIAATVAAAATPPPPPSLETYNNNGKRPYQRIEVPLENQAKKVRSSSETVDHIMTERKRRRELTERFIALSATIPGLKKIDKSTILSEAISHVKQLKQRVKELEEQKKKISVESVSFIIRKSHLMNGTNNKDDEKGAINNKAATSEALLPTVEARVLKNDVLIRIHCMKQSGIMLKILRHLKSFDLSAISNSVLPFGNSTLDITIIAQIGDKFNVTMNDLVKNLRLSILESPNDDEEPHNSY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0174 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Amo19g0174 357 Gene3D - 160 231 IPR036638 GO:0046983
Amo19g0174 357 MobiDBLite consensus disorder prediction 47 83 - -
Amo19g0174 357 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 29 346 - -
Amo19g0174 357 SMART finulus 168 217 IPR011598 GO:0046983
Amo19g0174 357 Coils Coil 201 228 - -
Amo19g0174 357 PANTHER BHLH TRANSCRIPTION FACTOR 29 346 - -
Amo19g0174 357 Pfam Helix-loop-helix DNA-binding domain 167 212 IPR011598 GO:0046983
Amo19g0174 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 234 IPR036638 GO:0046983
Amo19g0174 357 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0174 Amo-Chr19 1872476 1876089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0174 159 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.055 5.71e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g0174 HLH 6.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0174 - - adu:107463717 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0174 19 1872476 1876089 Amo19g0175 19 1888882 1894087 PCT
Amo19g0177 19 1912179 1915358 Amo19g0174 19 1872476 1876089 PCT