Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0173 ATGGCAATGGCAGCTTCTGCAGCAAAGAAGAAAATATGTGTAACTGGTGCAGGAGGTTTCTTAGCTTCTTGGGTTGTTAAGTTTCTTCTTTCCAAAGGATACATCGTTCATGGCACTGTTAGACAACCTGGTGATGAGAAATATGCTCACTTGATGAAGCTTGAGGGAGCTTCTGAGAATCTTAAACTCTTCAAAGCAGATTTGTTGAGTTATGAATCAGTTCAGTCAGCAATTGCTGGATGCAATGCTGTTTTCCATGTTGCTTGCCCTGTGCCTTCAACAACATCAACCAACCCTGAGGTAGAAATGATTGAGCCTGCCGTCAAGGGAACTACCAATGTGCTCGAAGCTTCTCTTGAAGCTAAAGTGGAACGAGTCATCTATGTGTCATCTGTAGCCGCTGCTTTCATGAACCCAAATTTTCCAAATGACAAAGTGATTGATGAATCTTGTTGGTCTGATAAAGACTATTGCAGAAAAACCAATAACTGGTATTGCTTCTCCAAGACAGAGGCTGAAGAGCAGGCCCTAGACTTTGCGAAAAGAACCGGGCTTGATGTGGTGAGCATTTGTCCTACCCTTGTGCTTGGACCCATTTTAAGGTCATCTATTGTGAATGCAAGTAGCTTGGTTCTCCTCAAGATTTTGAAAGGTTGTGAATCATTGGAGAACAAACATCGTTGGATAGTTGATGTGCGAGATGTAGCCGATGCAATTCTTTTGGCTTATGAAAAGCCTGAAGCAGAAGGGAGATATATATGCACTTCACACCCTGTTAAAGCAAAGGATATGGTGGAGAAATTGAAGAGTAAATATCCAAACTACAACTACCCTACAAACTTTGTTGAGGTGGATGATCATCAAACAAAGTTAAGCTCAGAGAAACTACAGAGGCTTGGTTGGAGATACAAGCCATTGGAGGAGACACTCACTGATGCTGTTGAGAGCTATAAAGAAGCTGGTCTCTTGCAATCAAAGTAA 981 0.42 MAMAASAAKKKICVTGAGGFLASWVVKFLLSKGYIVHGTVRQPGDEKYAHLMKLEGASENLKLFKADLLSYESVQSAIAGCNAVFHVACPVPSTTSTNPEVEMIEPAVKGTTNVLEASLEAKVERVIYVSSVAAAFMNPNFPNDKVIDESCWSDKDYCRKTNNWYCFSKTEAEEQALDFAKRTGLDVVSICPTLVLGPILRSSIVNASSLVLLKILKGCESLENKHRWIVDVRDVADAILLAYEKPEAEGRYICTSHPVKAKDMVEKLKSKYPNYNYPTNFVEVDDHQTKLSSEKLQRLGWRYKPLEETLTDAVESYKEAGLLQSK* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0173 326 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 7 323 - -
Amo19g0173 326 Pfam NAD dependent epimerase/dehydratase family 12 249 IPR001509 -
Amo19g0173 326 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 323 - -
Amo19g0173 326 Gene3D - 2 326 - -
Amo19g0173 326 CDD FR_SDR_e 13 301 - -
Amo19g0173 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 319 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0173 Amo-Chr19 1861174 1863976 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0173 5 323 Monolignol Biosynthesis Gene Families AT2G33590 65.000 1.17e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0173 - - gmx:100784817 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0151 19 1572714 1578180 Amo19g0173 19 1861174 1863976 PCT
Amo19g0173 19 1861174 1863976 Amo19g0151 19 1572714 1578180 PCT