Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0171 GACCCTCTCGATCACGAATCACTCTCCCTCGTCTCACGCCAGCTCTTTTTCCTTACCAACCGCCTCCGCACCGACCTCTCCGTTCTCGACCCTGTCCGCCCTCTCCTTCCCACCCTCCTCCGCCGTTTTCCCAACCTGACGACCATCAAAATCACGCGCTACTTCACGGGTGACATCAACGCGCTCCTCTCCCAAATCGCTTTGTTCGACCTACCCTCACTCCGTTCCCTCGACCTGTCCCACCAACCCACCTTCCCCTCACATGGGTTGCGACAATTCTCCCAAAAGTTTCCAACTTTGAAGTCACTCAACTGTTCCTTCATGCCTCAGGATTTGGGCTTAATTGTCGAGTGCTTCCCCAACCTCGAAGAAATCGATAATTGTCATTTTTTAGAAGAGCTTATTGTTCTTAAATCAACCAGCAAGCTTAGTGTGATAAGACAGATGGCTAACGCGATCCGTCAGAGATCCCAATTGAGGTCTTTGGCTTTTAGCGGTTCGCATGATAAGATTTCGGAGTTCATTGATGCATTGGTAAATTTGAAGGGTTTGACTTGTCTTGATTTGTCTTATTGCCGTGTATCTGATGAGGTCTTGTGTGCTGTTGCGGAAGAAGGCCTTCCCTTGAGGAAACTCTCTCTGCAGTGCTGTAAGGGATATGGATACCATGGGATTTCTCGCTTGTTGAGAAAGTGTAACCATTTACATTATTTAGATCTTGAGAGCACAGAATTTCTGAATGATCAGCGGGTGGGTGAGTTGTCTTTGCTTCTTGGTAACTTAAACTTTGTGAAACTTAATAGGAATAGAGAGCTTACTGATTTGAGTTTGTTCGCCATAATGCGTAACTGCCCTTTGATAACTGAGATCAGGATGGAAAGTACCTGTCTTGGGAAGAAGAAGGTGGAGGAGAATTTTTTGGTTGTGAATTATTCTCATGTGAAGTTTCTCTATTTGGCTAATAATTTATGGCTTGGTGATAGAAGTCTCACTATACTTGCTTCCGTATGCCCAAACTTGGAGATAATGGATTTGAGCGATTGCGGGACCCATTCAAAGGGTGCTATTGAAGTTTTACGGAGGTGTTGTAAGATTCAACGCTTGGACTTAGCTCATTTAGGATACAAGGAGTTTCCGTTTAAGGTTAACTTTGAAGTTCCTACATTATTTGTGTTGAATTTGTCATGGTCGAGAATCAGCAATGAAGAACTCTCTCTTATTTCAAAGAATTGTTACAACTTAAAAGAACTTAAATTGGAATATTGTTACAGAATCACGGCCAGTGGGGTAAAGCAGGTGGTAAAAAATTGCAAGCAACTAAGAATGATAAGTTTGTATTCTTGTCAAAACATATCTACTGATGTCATTGCTTGGATGTTATTGGCAAGGTCATCGTTGAGAAAAATAACATTTGCTAGTGATGCGGGCCGGAGGGATCTCTCCCTAAGTCATGGATGCGTCGTCGGCTGGGATCTGCGCGGTCGTCGGTTGGGATTGCGCGGTTGTTGGTTGGGATTGCCTGGGATTACTAATATTATGAAGAAAATGGCGACAGCGACGGCGAAGAAGGTATGCGTGACCGGTGCCGGTGGTTTCGTAGCTTCTTGGCTCGTTAAGCTTCTCCTTTCCAAAGGATACATCGTTCATGGCACTGTTAGAAAACCTGGAGCTTCTGAGAAACTTAAACTGTTCAATGCAGATTTGTTGAGTTATGAATCCATTTATTCAGCAATTGTTGGATGCAGTGCAGTTTTCCATGTTGCTTGCCCTGTAGAAATGGTTGAGCCTGCTGTGAAGGGAACTAGTAATGTACTTGAAGCTTCTCTTCAGGCTAAAGTGGAGAGAGTTGTTTATGTCTCATCCTCAACTGCTATTATCCTGAACCCGAATTTGCCTAATGATAAAGTGATTGATGAATCATATTGGTCTGATAAAGAGTACTGCAGAAAAACCAAGGAATGGTATCCCTTTTCAAAGATGAAAGCAGAAGAGCTGGCGCTGGATTTTGCAGAAAGAACCGGGATTGATCTAGTGAGAATTTGTCCAACTGTTGTGTTGGGGCCAATTTTGCAGTCAACTTCTCTGAATGCCACTAGCTTGTTTCTCCTCAACCTTCTAAAAGGCTGTGAGCCAGTGGAGAATAAGCTTAAGTGGATAATAGATGTAAGAGATTTAGCTGATGCATTACTATTGGCTTATGAGAAGATTGAAGCAGAAGGGAGATACATATGCACTTCATGCCCTGCTAAACCAAAGGATTTGGTAGAGGAATTGAAGAGTGAATATCCAAACTACAACTACCCTACAAAGCCATTAAAGGAGACACTCATTGATTCTGTTGAGAGCTATAAGGAGGCTGAGATCAAGATGAAGGCATCAGTGAATTTTCCTGATGAATGCTGGGAATCAATCTTCAGATTCCTAGGCCACGGCCGAGACTTGGAATCGGTTTCCATGGTCTGCAAGAGGTTCCTCACAATTTCAAGCCAGCTTCAAGATTCCCTCACAATATTTGATGCAACAACAATGCTCATTCCAAAGCTGTTCTTGAGATTCTCAAGGCTCAAAGTCTTAGACCTCAGTTACTTCAATGGGAACCTCGAAGGCCTGCTTTGTCAGGTTTCACAATCCACCTTGGACCTTGATACCCTTAACCTTTCCAATCAGAGGACACTCCCCATTGATTTGTTCCGGGACATCGGCTCGAAGATGAAGAACTTAAGGGTGTTGATTTGTTCAAACATTGGCTCTCTTTGGGATAGCCATTTGATGATCATGGCCTATTGTTTCCCATTGCTTCAAGAGCTTGACATCAGCTTCCCATTGATTTCAGAAGCAACAGATTTTGGGATCTCAAAGTTGTCTTTGTTGCTCGAGCGCCTTCGCAAGATTAACTTCTCTGGAAACTACTTAGTCACTGATCAATCACTGGTAGCTCTGTGTCAGAACTGTATGACAATTGAAGACATTTCCTTCTTCAATTGTTTTAAGATAACTCAAGGAGGCATTGCTAATGCTATCAATTTCAGACCAACCTTGGCTTCCATAGCATTCAACATTAAGAAAAGAAGAATTCATGGACGTGGCTTGGCACCTATGCCAATTAACTTGGATTTGATTGATTCACTCAAGAGTTTGAAAAGCTTAACTTGTATTGATTTGTCGAATTCTTTTATCTCGGATGAGTTGCTCTTTTCTGTTGCAGAATGTTGTCATTCCATAAAGAAACTCATCCTCCAAGACTGCTGCAATTTCACATTTTCAGGAATATATTCTGTGGTATCAAATTGTCCATTAATACAATGCTTGGATCTTAGAAAAACCGACTTCCTAACCGATCATTGTATTGGCAAGCTATCAATGTTTCTTCTCAATTTAACCTCTATAAACCTCAGTGGTTGTGATCAGCTTACCAATTCAACATTTTACACACTGACAAGAGGTTGTCCTAAACTTGTTGAGATTAAAATGGACAGAACATATCTTGGAGAAGTAGGGGAAGATTCAGATTCTTCTCTTGTTCCGGTTCAGAACACTCAAGTGAAAAGTCTCTATCTGGGTCAAAATATTTTACTTGGTGATCAAAGTTTGATGAAAATGGCTTCTATTTGCCCCAATGTAGAGCTTCTCGACTTAAACTCTTGCGGCAGCATATCGGGAGAATGTGTCGTGAACGTTCTCCGGAAATGCCGAGAGATAAGGCACTTAGGCTTAGCCAATACAGGAGTGAAGCTGTTGAAGATGGACTTTAAAGTTTTGCAACTGAAGGTATTGAACTTGTCAGGATCAAGAATCAATGATGAAGCACTCTCCATAATCTCAAAATGTTGTTGTGGACTAGTAGTTCTGGATATTCAAGGTTGCAACAATGTTACCACAAAAGGGGTGAAAGAAGTGGTAGAAAGCTGCATGGAGTTGAGAGAGCTGAATTTGAAGAACTGTGATTTTGTAAATGATAATTTTGTTGCTGCCTTAGAACTTATAAGGCCATCATTGAGGAGAATAATCACAAACTCTTATATAACTCAAGGAGGCATTGCTGATGCTATCAGCTTCAGATCAACCTTGGCTTCCATAGCATTCAACATTGAGAGAAGAAGGATTCATGGACGTGGCTTGGCACCTATGCCAATTAACTTGGATTTGATTGATTCACTTTGA 4161 0.4189 DPLDHESLSLVSRQLFFLTNRLRTDLSVLDPVRPLLPTLLRRFPNLTTIKITRYFTGDINALLSQIALFDLPSLRSLDLSHQPTFPSHGLRQFSQKFPTLKSLNCSFMPQDLGLIVECFPNLEEIDNCHFLEELIVLKSTSKLSVIRQMANAIRQRSQLRSLAFSGSHDKISEFIDALVNLKGLTCLDLSYCRVSDEVLCAVAEEGLPLRKLSLQCCKGYGYHGISRLLRKCNHLHYLDLESTEFLNDQRVGELSLLLGNLNFVKLNRNRELTDLSLFAIMRNCPLITEIRMESTCLGKKKVEENFLVVNYSHVKFLYLANNLWLGDRSLTILASVCPNLEIMDLSDCGTHSKGAIEVLRRCCKIQRLDLAHLGYKEFPFKVNFEVPTLFVLNLSWSRISNEELSLISKNCYNLKELKLEYCYRITASGVKQVVKNCKQLRMISLYSCQNISTDVIAWMLLARSSLRKITFASDAGRRDLSLSHGCVVGWDLRGRRLGLRGCWLGLPGITNIMKKMATATAKKVCVTGAGGFVASWLVKLLLSKGYIVHGTVRKPGASEKLKLFNADLLSYESIYSAIVGCSAVFHVACPVEMVEPAVKGTSNVLEASLQAKVERVVYVSSSTAIILNPNLPNDKVIDESYWSDKEYCRKTKEWYPFSKMKAEELALDFAERTGIDLVRICPTVVLGPILQSTSLNATSLFLLNLLKGCEPVENKLKWIIDVRDLADALLLAYEKIEAEGRYICTSCPAKPKDLVEELKSEYPNYNYPTKPLKETLIDSVESYKEAEIKMKASVNFPDECWESIFRFLGHGRDLESVSMVCKRFLTISSQLQDSLTIFDATTMLIPKLFLRFSRLKVLDLSYFNGNLEGLLCQVSQSTLDLDTLNLSNQRTLPIDLFRDIGSKMKNLRVLICSNIGSLWDSHLMIMAYCFPLLQELDISFPLISEATDFGISKLSLLLERLRKINFSGNYLVTDQSLVALCQNCMTIEDISFFNCFKITQGGIANAINFRPTLASIAFNIKKRRIHGRGLAPMPINLDLIDSLKSLKSLTCIDLSNSFISDELLFSVAECCHSIKKLILQDCCNFTFSGIYSVVSNCPLIQCLDLRKTDFLTDHCIGKLSMFLLNLTSINLSGCDQLTNSTFYTLTRGCPKLVEIKMDRTYLGEVGEDSDSSLVPVQNTQVKSLYLGQNILLGDQSLMKMASICPNVELLDLNSCGSISGECVVNVLRKCREIRHLGLANTGVKLLKMDFKVLQLKVLNLSGSRINDEALSIISKCCCGLVVLDIQGCNNVTTKGVKEVVESCMELRELNLKNCDFVNDNFVAALELIRPSLRRIITNSYITQGGIADAISFRSTLASIAFNIERRRIHGRGLAPMPINLDLIDSL* 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0171 1386 SUPERFAMILY RNI-like 34 295 - -
Amo19g0171 1386 PANTHER NODULIN-LIKE PROTEIN 7 242 - -
Amo19g0171 1386 SUPERFAMILY F-box domain 795 829 IPR036047 GO:0005515
Amo19g0171 1386 Gene3D Ribonuclease Inhibitor 6 377 IPR032675 -
Amo19g0171 1386 SUPERFAMILY RNI-like 258 471 - -
Amo19g0171 1386 Gene3D Ribonuclease Inhibitor 1167 1248 IPR032675 -
Amo19g0171 1386 Pfam NAD dependent epimerase/dehydratase family 524 738 IPR001509 -
Amo19g0171 1386 PANTHER NODULIN-LIKE PROTEIN 1012 1105 - -
Amo19g0171 1386 PANTHER NODULIN-LIKE PROTEIN 790 1020 - -
Amo19g0171 1386 Gene3D Ribonuclease Inhibitor 1249 1348 IPR032675 -
Amo19g0171 1386 Gene3D Ribonuclease Inhibitor 381 486 IPR032675 -
Amo19g0171 1386 SUPERFAMILY RNI-like 1038 1332 - -
Amo19g0171 1386 CDD FR_SDR_e 524 770 - -
Amo19g0171 1386 Gene3D Ribonuclease Inhibitor 1018 1165 IPR032675 -
Amo19g0171 1386 Gene3D Ribonuclease Inhibitor 792 1017 IPR032675 -
Amo19g0171 1386 PANTHER UNCHARACTERIZED 7 242 - -
Amo19g0171 1386 PANTHER UNCHARACTERIZED 1114 1329 - -
Amo19g0171 1386 PANTHER UNCHARACTERIZED 1012 1105 - -
Amo19g0171 1386 PANTHER UNCHARACTERIZED 176 463 - -
Amo19g0171 1386 PANTHER UNCHARACTERIZED 790 1020 - -
Amo19g0171 1386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 516 787 IPR036291 -
Amo19g0171 1386 Gene3D - 513 791 - -
Amo19g0171 1386 SMART LRR_CC_2 411 436 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 1071 1096 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 1277 1302 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 181 205 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 1178 1203 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 958 983 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 1046 1070 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 1204 1229 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 1303 1328 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 437 464 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 206 231 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 258 283 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 1252 1276 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 1097 1119 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 1123 1148 IPR006553 -
Amo19g0171 1386 SMART LRR_CC_2 71 96 IPR006553 -
Amo19g0171 1386 SUPERFAMILY RNI-like 840 1106 - -
Amo19g0171 1386 PANTHER NODULIN-LIKE PROTEIN 1114 1329 - -
Amo19g0171 1386 PANTHER NODULIN-LIKE PROTEIN 176 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0171 Amo-Chr19 1831662 1849161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0171 516 788 Monolignol Biosynthesis Gene Families AT2G33590 51.411 2.45e-96 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0171 K10268 - gmx:100811565 702.205