Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0153 ATGTCAGGTGAGGAAGCCCCAGTTGTGGCAGCCGAGCCAGTGGCTCCCGCCATTGGTGAGCCAATGGATATTATGACTGCCTTACAGCTTGTGCTCAGGAAGTCACTTGCTTATGGTGGTCTTGCACGTGGCCTTCATGAGGGTGCCAAGGTTATTGAGAAGCGCACCGCACAGCTTGTTGTTCTCGCAGAGGACTGCGACCAACCTGACTATGTCAAACTTGTCAAGGCCCTTTGTGCTGAGCACAATGTTAGCCTGCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAGTGGGCTGGTTTGTGCAAGATTGATTCAGAAGGAAAAGCCAGGAAGGTGACTGGCTGCTCTTGTGTTGTTGTGAAGGACTTTGGCGAGGAACATGAAGCTTATAACGTTGTCCTTCAGCATGTGAAAGCTCAATGA 426 0.5094 MSGEEAPVVAAEPVAPAIGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0153 141 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0153 141 PRINTS Ribosomal protein S12E family signature 31 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0153 141 PRINTS Ribosomal protein S12E family signature 45 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0153 141 PRINTS Ribosomal protein S12E family signature 86 107 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0153 141 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0153 141 SUPERFAMILY L30e-like 20 139 IPR029064 -
Amo19g0153 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0153 141 Gene3D - 9 141 IPR029064 -
Amo19g0153 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 120 IPR004038 -
Amo19g0153 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0153 Amo-Chr19 1597709 1599656 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0153 18 141 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 76.613 6.84e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0153 K02951 - gmx:100500093 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0149 19 1551505 1555048 Amo19g0153 19 1597709 1599656 PCT
Amo19g0153 19 1597709 1599656 Amo19g0149 19 1551505 1555048 PCT