Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0149 ATGAAATTGCAATGGCAACATCCGGACTCATTACGACGGCGACTAAGTGATGAGTCTGTGGAAGAAGAAGAGAAGAACTTAACAGATTCAGATTTACCTAGAGAAAAGGGACTCGGTCCGTCCCTTGCTATAAAGGAACATGGGAGTTGTGAAGGGGTAGATGGCGATGGACTAAGCAACAAGGATGATGGGAGCTATGCGGTTTTTTGTGAAGAAGTCGAGAAGAAGAAGATTCTGGTGAAGGAGAGCTTGTTCTTTTTAGCTATCATCAAAGATGTCAGGGATGAACTAGTTATTCTTTATGTTATCATCACTGTATTTCTTGAAGAAGCCCCAGTTGTGGCAGCTGAGCCAGCAGCTCCCGCCATTGGTGAGCCAATGGATATTATGACTGCCTTACAGCTTGTGCTCAGGAAGTCACTTGCTTATGGTGGTCTTGCACGTGGCCTTCATGAGGGTGCTAAGGTTATTGAGAAGCGCACCGCACAGCTTGTTGTTCTCGCAGAGGACTGCGACCAACCCGACTATGTCAAACTTGTCAAGGCCCTTTGTGCTGAGCACAATGTTAGCCTGCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAGTGGGCTGGTTTGTGCAAGATTGATTCAGAAGGAAAAGCCAGGAAGGTGACTGGCTGCTCTTGTGTTGTTGTGAAGGACTTTGGCGAGGAACATGAAGCTTATAACGTTGTCCTTCAGCATGTGAAAGCTCAATGA 741 0.4669 MKLQWQHPDSLRRRLSDESVEEEEKNLTDSDLPREKGLGPSLAIKEHGSCEGVDGDGLSNKDDGSYAVFCEEVEKKKILVKESLFFLAIIKDVRDELVILYVIITVFLEEAPVVAAEPAAPAIGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0149 246 Gene3D - 114 246 IPR029064 -
Amo19g0149 246 PANTHER 40S RIBOSOMAL PROTEIN S12 109 246 - -
Amo19g0149 246 MobiDBLite consensus disorder prediction 1 42 - -
Amo19g0149 246 SUPERFAMILY L30e-like 126 244 IPR029064 -
Amo19g0149 246 MobiDBLite consensus disorder prediction 1 32 - -
Amo19g0149 246 PANTHER 40S RIBOSOMAL PROTEIN S12 109 246 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0149 246 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 132 225 IPR004038 -
Amo19g0149 246 PRINTS Ribosomal protein S12E family signature 191 212 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0149 246 PRINTS Ribosomal protein S12E family signature 136 149 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0149 246 PRINTS Ribosomal protein S12E family signature 216 229 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0149 246 PRINTS Ribosomal protein S12E family signature 150 166 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo19g0149 246 ProSitePatterns Ribosomal protein S12e signature. 132 150 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0149 Amo-Chr19 1551505 1555048 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0149 123 246 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 76.613 4.84e-65 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0149 K02951 - gmx:100305687 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0149 19 1551505 1555048 Amo19g0153 19 1597709 1599656 PCT
Amo19g0153 19 1597709 1599656 Amo19g0149 19 1551505 1555048 PCT