Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0117 ATGACATTTGGTTGTCCATGTCAGGGTTTTGTTAACGTTTTTGTGCCGGAAATTGTCCCAAGAACTAACATGAATCACCAATTCCTGGCGGGGTATCTATGTAATTTCCTCAAAATGTTTGACACTGGTTACAAGTCACAGTATATTGGAGGCCAGAGGGAGAAGTTTGTAAGGTTGGATGATCTTGATTCTAACATGTCATTCTCAGGCAGACCGAGTTTGATGGATAGGCTAAGATCGATCTTCCATGTTGGYRGCCGCGCAAGGAAGAATCCKTCRCAATCCTTTAGGCTAGGAGTGAAGAAAGGATCAGCAGGACTCAGAACATTTGGAAGGTCACTGAAAACTGGTGTAACTACTTGGGCAGTGTTCCCTGAAGATCTCAAAGTTTCAGAGAAGAAAGTGTTTGATCCTCAAGACAAGCACCTTCTCCATTGGAACAAGTTCTTTGAGATCCTCTGCATTTTTTCAGTAGCTGTTGACCCTTTCTTCTTCTATCTCCCTTACTTCAACGTCAAGTCATTCTGCCTYGCCATAGATAGCACRCTGGCGAATTTTACAGCAGCACTGAGGACTGTRTTGGATTTTATCTATCTCCTGCGCATAAGCTTTCAGTTCCGAACTGCTTATATCGCGCCTTCATCTCGTGTGTTTGGAAGAGGTGAACTTGTCATAGATCCTGCAAAGATTGCCAGTAGATATTTACAGCGATATTTCGTTATCGACTTCATGTCTGTGTTTCCTGTGCCACAGATTATAGTGTGGAAATATCTATACAAAACAAGACATTCAGAGGTATTGAGTACAAAAACAGCACTGTTGAGAACTGTGATCCTGCAATATTTTCCAAGATTTCTAAGGTTTCTTCCATTAGCATCGGAAGTTAAAAAGACAGCTGGTGTTTTTGCAGAAAATGCACTGCTTGGAGCCATTTACTATTTGATTTGGTTTATGCTAGCTAGTCATATAACTGGCTCCGTTTGGTACTTACTTGCCATAGAACGCAATGACACATGTTGGAACAATGTTTGTCTTGAAGATAATAGATGTAACAGTCATTTCTTGTACTGTGGAAGTACCAATAAGCACATCCCAGGGTTTGATGCTTGGAAAAATGTCAGTGAGGAWGTTCTTGTAAAGAAGTGCTTTGTTGATGGTGAGTTCAATTATGGAATCTTTGCTCAAGCAATCAAGAGTGGTATTGTTGCTTCTGTTGAAGTCTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGCCTTCAAAATCTGAGTACAATTGGCCAAGGGCTTTCAACCAGCACCTACAGTAAAGAGGTGTGGTTTTCCATAGCAATAGCTGTTATGGGTCTCATCCTTTTCGCACTTCTGATTGGAAACATGCAGACATACCTTGACTCAATGTCGGTTCATCTTGACGAAATGAGGATCCAAAGACGCGTGGACGAAGAGAGCTTGATGAAGAGCCTTCCAAAAGATTTAAGGAGAGACATCAAACGGCATCTTTGTTTGAATCTGGTTAAAAGGGTTCCTCTCTTTGCTAACATGGAGGAACGCCTGCTCGATGCTATATGCGAGCGACTGAAACCTACTCTGTATACAGAGGGCACTGACATAGTTAGGGAAGGAGACCCTGTCAACGAGATGCTCTTCATCATCCGTGGACGCCTAGAGAGTGTCACCACAGATGGTGGAAGGAGTGGATTCTTTAACAGAGGGCTTCTCAAAGAAGGAGACTTCTGTGGTGAGGAGCTACTAACATGGGCACTAGATCCAAAAGCTGCAGCAAACTTGCCATCATCTACTAGGACAGTGAAGGCCATAAATGAGGTCGAGGCATTCGCATTGGAAGCYGAGGAGCTTAAGTTTGTCGCTTCGCAGTTTAGATACATTCATAGTAGGCAGGTTCAGCATACCTTCAGRTTCTACTCACAGCAATGGAGGACATGGGCCGCTATCTACATTCAAGCCGCGTGGAGGAGGTATATGAGGAGGAAACACACCATGCAAAGAAGGCAGGAGGAAGAGTATTATTATGATTCTGATGACAGTGGTGGTGATTCTGCAAAGGCCTTGGTTAAACGTTCCTCAAGTTCATCTAGCTTTGCCACAACCATGTATGCTTCACGCTTTGCCGCGAATGTACTTCACGGTCATAGGCTTCGTGAAGCAGGTAGTTCCACTAGTCTAGGAAGAATTCAAAAACCGTCTGAACCTGACTTCAGTCATTATGGTCCAAATGTAGTGATCAGCTCCTCCATGCAGAAGATGCTTCCAAATCAAAATCTTCTTCCCACCATGTGCTTGCCTGCAATATCAAATGAGGCAGCTCCAACAAAAAAAAAAAAAGCTTAA 2349 0.4295 MTFGCPCQGFVNVFVPEIVPRTNMNHQFLAGYLCNFLKMFDTGYKSQYIGGQREKFVRLDDLDSNMSFSGRPSLMDRLRSIFHVGXRARKNPSQSFRLGVKKGSAGLRTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKHLLHWNKFFEILCIFSVAVDPFFFYLPYFNVKSFCLAIDSTLANFTAALRTVLDFIYLLRISFQFRTAYIAPSSRVFGRGELVIDPAKIASRYLQRYFVIDFMSVFPVPQIIVWKYLYKTRHSEVLSTKTALLRTVILQYFPRFLRFLPLASEVKKTAGVFAENALLGAIYYLIWFMLASHITGSVWYLLAIERNDTCWNNVCLEDNRCNSHFLYCGSTNKHIPGFDAWKNVSEXVLVKKCFVDGEFNYGIFAQAIKSGIVASVEVFPKFCYCLWWGLQNLSTIGQGLSTSTYSKEVWFSIAIAVMGLILFALLIGNMQTYLDSMSVHLDEMRIQRRVDEESLMKSLPKDLRRDIKRHLCLNLVKRVPLFANMEERLLDAICERLKPTLYTEGTDIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRYIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRYMRRKHTMQRRQEEEYYYDSDDSGGDSAKALVKRSSSSSSFATTMYASRFAANVLHGHRLREAGSSTSLGRIQKPSEPDFSHYGPNVVISSSMQKMLPNQNLLPTMCLPAISNEAAPTKKKKA* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0117 782 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 477 742 - -
Amo19g0117 782 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 477 742 - -
Amo19g0117 782 ProSiteProfiles IQ motif profile. 646 674 IPR000048 GO:0005515
Amo19g0117 782 Pfam Ion transport protein 146 468 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo19g0117 782 Gene3D Jelly Rolls 508 628 IPR014710 -
Amo19g0117 782 Pfam Cyclic nucleotide-binding domain 531 620 IPR000595 -
Amo19g0117 782 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 50 480 - -
Amo19g0117 782 Gene3D - 147 466 - -
Amo19g0117 782 SUPERFAMILY Voltage-gated potassium channels 138 463 - -
Amo19g0117 782 CDD CAP_ED 510 641 IPR000595 -
Amo19g0117 782 SMART cnmp_10 510 641 IPR000595 -
Amo19g0117 782 SUPERFAMILY cAMP-binding domain-like 498 627 IPR018490 -
Amo19g0117 782 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 50 480 - -
Amo19g0117 782 ProSiteProfiles cAMP/cGMP binding motif profile. 510 593 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0117 Amo-Chr19 1112909 1119610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0117 44 739 Ion Channels AT1G15990 63.428 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0117 K05391 - gmx:100810453 1067.76