Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0104 ATGGCTGCAGCAGAGGCAGCTCAAGCTGCCGCTGGTCCACGGTATGCACCTGATGATCCCACCCTTCCTACGCCATGGAAGGGGCTAATTGATGGAAGCACTGGTCTTTTGTACTACTGGAACCCTGAAACTAATGTCACCCAGTATGAGAAACCTCCCCCTTTGCCGTCGGGCCCTGCTCCGGCTGCTTCTACACCCAACATGGCGCCCATACCCGTGGCTCATGCGATGCAATCTGGTGGGATGATGGGGCAGCATGGGCAGCAAATGCTTCAGTCCTCTCAACAGCAAGGGAGTAACCTTGCTCAGCAACATGGGCAAATGATGCCACAACAGCAGAGTTCGCATGTGGCATCTCAGCAGAAGCCATCTCCGGTTGCACAAGGGGTGCAACAGCAGAATTTGCAGTTGGCACAGTCCATGCCACAACCAGGGTTTAATCAGGCTGGACAGCATTCATTGCCGCATCAGGGACAGCATTCAATGCAGCCTCAGGGACAGTATCCCATGCAACCCCAAGGGCAACAAATGGTCCAGCCTAAAGGGCAGCAGATGACACAACAACCACATCAGATGCATTATCAGATGCAGCCCCAAGGTATCAATGCCCAACATTTTGGTCAAGGAGCATCTCAGGCTCAGGGCTCACATTCTGTGCAACCACAAGCACATCAATTCGCCCCCCAGAACATGCATTATATGCCATATCAGCCAAACATGCCTCAACCTGTGCAGCCAAGTTCCCAGCATAACATGCATGGTCATTCTTATGAAAACCAACAAGACTTCAAATCAGCATTCCCAAAGATAGAGGAACCAGAGTTTAAAAATGAAAACCAGGTTGGAGTTTCGCCATCTAACTATCAACAAACCAATCAGAACATTCCTGCTGGAGTTAGATCCGGACCATCTGGGCAAGTGCCAGATGGAGGTGCAAATGCTGGTCACTCAAAACAGTTTGGTGGCGCACCAGGAAGCATACAACAGTCTCCCTCTGCAGTGCCATTACAACAGGGTAGTTCTTATCCAGTTTACCAACATGGTCCTAGCTTTCAAAACCAGATGGGGCCTGGTATGATGCATGGTCATCCACCCAATGTCCATCCTGGAAGCCAGAAGATGGGACATGCAGATAATTTTCATGGTAGAGCTGGGAATGAATATTACTATAACTCTAGCAAAGAGATGCCAGCTATGGGTCCTCAGCAGCCAAATATTGCACCAATACCCATTTCAACAAAGCAGCAGGATATGAGAATGGGCAGCAGCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTATCCCAGGTCATCCAATGCACATGTTTCCACCAGTAGGAGGGCATCCGCCTCTCTCAAGTAACTCCTTGAAAGGACCTCCTTATATGGGATCTACAGATGTTACTGATATGACACCTGCTGAAATTTATTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTTATGACATTTGATGCTACTGGATTTCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATTCAGGCTCAAACTTGGCCAGTAGCACTGCAAGGTAGGGACATAGTGGCAATTGCAAAAACAGGCTCTGGCAAAACATTGGGCTACTTAATGCCTGCATTCATCCTTCTTAGGCAGAGAAGGAATAATCCTTTGAATGGCCCCACTGTCTTGGTTTTAGCTCCAACACGTGAACTTGCTACACAGATCCAAGATGAGGCTGTCAAATTTGGAAGATCTTCACGTTTCTCTTGCACGTGTTTGTATGGTGGAGCACCCAAAGCCCAACAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGCCGACTCAATGACATCCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTGCTTGTGCTTGATGAGGCTGACCGTATGCTTGACATGGGTTTTGAACCTCAAATCCGGAAAATTGTTAATGAGATTCCACCACGTAGGCAAACTCTCATGTATACGGCAACATGGCCAAAAGAAGTAAGAAAAATTGCCAGTGACCTGCTCGTTAATCCTGTTCAGGTTAACATTGGAAGTGTTGATGAGCTTGCCGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCTCAAATGGAGAAGCAGAGGCGATTAGAGCAGATCCTCAGATCCCAAGAGCGGGGCTCTAAGGTTATTATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGTCGCAATTATGGGGCTGCTGCAATTCATGGTGACAAGTCTCAAAGTGAGAGGGATTGGGTTTTAAATCAGTTCCGGAGTGGGAAGTCCCCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATCAAGGATATAAGGGTGGTTATAAACTATGATTTCCCTACTGGAGTTGAGGATTATGTACACCGAATTGGAAGAACTGGACGGGCAGGTGCTACTGGAGTATCGTACACCTTTTTCTCGGAGCAGGACTGGAAACATGCATCTGATTTAATCAAAGTCTTGGAGGGTGCAAACCAGCATGTGCCTCCAGAGCTAAGACAGATGACCTTGCGCGGACCACCAAACTTTGGAAAAGAGCGGGGTGGGATGAGTCGTTTCGACTCTGGTGGTGGTGGGCGTTGGGATAATGGTGGTCGTGGTGGCATGAGGGATGGGGGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTAGTGGTCGGGGCGGCATGAGGGATGGTAACTTTGGTGGCCGAGGTGGCATGAGGGAGAGTGGATTCAGCAATGATGGTGGCATGAGAGATGGTGGCTTTGGTGCTCATGGTGCTAGCGGTCAAGGTGGGAGAGTTGATATGTTTGGTGGTAGGGGAAATAGAGGTCGAGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGGTGGGGTAGAGGGGATCGTGGTCCAAATGACCGATTCAACATGGATGGAAGAGGAAGAGGGCGAGGACGTGGGCGATTAGACAACAGAAGAGATGTTGGATACAGGAATAGAGGCAGAAGCCGTAGCCGTAGCCCAGAGAGAGTACGAACATGGGACTATAGTAGCAGAAGTCGTAGTAGGAGTCGCAGCAGTAGGAGCTGGAGCCGGAGCCGGAGCCGAAGCAGAAGCCGCAGTTGGTCGCGTGGTCGCAGTCGGAGTCGCAGCTATAGCCCTAGCCCTCGTCGGAGTCGAAGCCGCAGTCGTAGCGGTCGCAGTTACAGCCGCAGCCGCAGCCGAAGTCCCCGTAGAAGTCCCAGCTATGATAGGCGTGATAGGACAGATCAACACCATTCTGATCAAAAGGATTATAGAGAACCAGAGGTCCAAGCTCCCAATCCGGGAGTGTCTCCAAGCTCCCAAGGGCAGCAGAATTCAATTTTGGGAACTGATCAAGTGGATCAGGCGCCACTGGTTGCTGGGAGCGGTGACCCAGAAGATCCCAATGCTCTGGCATAG 3528 0.496 MAAAEAAQAAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPPPLPSGPAPAASTPNMAPIPVAHAMQSGGMMGQHGQQMLQSSQQQGSNLAQQHGQMMPQQQSSHVASQQKPSPVAQGVQQQNLQLAQSMPQPGFNQAGQHSLPHQGQHSMQPQGQYPMQPQGQQMVQPKGQQMTQQPHQMHYQMQPQGINAQHFGQGASQAQGSHSVQPQAHQFAPQNMHYMPYQPNMPQPVQPSSQHNMHGHSYENQQDFKSAFPKIEEPEFKNENQVGVSPSNYQQTNQNIPAGVRSGPSGQVPDGGANAGHSKQFGGAPGSIQQSPSAVPLQQGSSYPVYQHGPSFQNQMGPGMMHGHPPNVHPGSQKMGHADNFHGRAGNEYYYNSSKEMPAMGPQQPNIAPIPISTKQQDMRMGSSPFQNVMPSGNGSGIPGHPMHMFPPVGGHPPLSSNSLKGPPYMGSTDVTDMTPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEAVKFGRSSRFSCTCLYGGAPKAQQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNYGAAAIHGDKSQSERDWVLNQFRSGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQHVPPELRQMTLRGPPNFGKERGGMSRFDSGGGGRWDNGGRGGMRDGGFGGRGGMRDGGFSGRGGMRDGNFGGRGGMRESGFSNDGGMRDGGFGAHGASGQGGRVDMFGGRGNRGRGFGGPRGGHAGWGRGDRGPNDRFNMDGRGRGRGRGRLDNRRDVGYRNRGRSRSRSPERVRTWDYSSRSRSRSRSSRSWSRSRSRSRSRSWSRGRSRSRSYSPSPRRSRSRSRSGRSYSRSRSRSPRRSPSYDRRDRTDQHHSDQKDYREPEVQAPNPGVSPSSQGQQNSILGTDQVDQAPLVAGSGDPEDPNALA* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0104 1175 Pfam DEAD/DEAH box helicase 521 691 IPR011545 GO:0003676|GO:0005524
Amo19g0104 1175 Gene3D - 707 877 IPR027417 -
Amo19g0104 1175 Pfam WW domain 22 52 IPR001202 GO:0005515
Amo19g0104 1175 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 293 967 - -
Amo19g0104 1175 SMART ww_5 21 54 IPR001202 GO:0005515
Amo19g0104 1175 Gene3D - 472 706 IPR027417 -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 995 1050 - -
Amo19g0104 1175 SMART helicmild6 752 836 IPR001650 -
Amo19g0104 1175 CDD SF2_C_DEAD 716 845 - -
Amo19g0104 1175 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 293 967 - -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 1 25 - -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 1105 1130 - -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 49 68 - -
Amo19g0104 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 731 875 IPR001650 -
Amo19g0104 1175 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 497 525 IPR014014 GO:0003724
Amo19g0104 1175 MobiDBLite consensus disorder prediction 294 386 - -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 78 192 - -
Amo19g0104 1175 Pfam Helicase conserved C-terminal domain 728 836 IPR001650 -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 322 353 - -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 52 66 - -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 1053 1102 - -
Amo19g0104 1175 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 648 656 IPR000629 -
Amo19g0104 1175 SMART ultradead3 516 719 IPR014001 -
Amo19g0104 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 702 IPR014001 -
Amo19g0104 1175 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Amo19g0104 1175 MobiDBLite consensus disorder prediction 872 914 - -
Amo19g0104 1175 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Amo19g0104 1175 SUPERFAMILY WW domain 14 52 IPR036020 GO:0005515
Amo19g0104 1175 MobiDBLite consensus disorder prediction 943 1175 - -
Amo19g0104 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 852 IPR027417 -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 1136 1155 - -
Amo19g0104 1175 MobiDBLite consensus disorder prediction 82 192 - -
Amo19g0104 1175 CDD WW 23 51 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0104 Amo-Chr19 1002196 1008533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0104 485 874 Eukaryotic Initiation Factors Gene Family AT3G19760 34.351 3.36e-67 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0104 K12823 - gmx:100807830 1360.13