Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0099 ATGACCAACGGCCACATAACCGTAACCGTCGACACCAGGCATTCTGACGCCACCGAACAGCGACGCATTCCTCCTCCTCCTCCTGCTGCTGCTGCTGCTTCCGCTGCCGTCAATCTCGACTATGACGACGACGACCACAACGACGACGACGATGTTGCAGATCCAAATGATCCTTTCGATATTCAACACACCAAGCATGCGCCCATCGAGACCCTCCGCCGTTGGAGACAAGCAGCACTCGTGCTCAATGCATCAAGGCGCTTTAGATATACCTTGGACCTAAAAAAGGAAGAGGAGAGACAGCAAAAGAAAAGCTTGATTAGAGCCCATGCACAAGTCATAAGAGCAGCATTGCTTTTCAGATTGGCTGGTGAACGTGAATTAGTGGTAACAGCACCGACACCTGCACATCCAGTTGGTGACTTTGGAATTGGGCTCGAACAACTTTCTTCAGTTTCTAAGGAGCAGAACACTGCTGCTTTAGAAGAATATGGAGGGGCAAGTCAAGGGCTTATCAAATTTATTAAGAGGTTTTTATGGGAAGCATGGCAAGATCTAACTCTTATAATATTGATTATAGCAGCAGTTGTCTCATTGGTGCTTGGAATAAAAACAGAGGGTTTGAGTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCGGTTTTTCTGGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTAAGAATTTGAATGCAGAGAAACAAAATATACAGTTGGAGGTCATGAGAGGTGGCAGAACAGTTAAATTGTCGATATTTGACATTGTTGTTGGTGATGTAGTACCGCTTAAAATAGGAGATCAGGTTCACAAGGATCACAAATCACCCTTTTTGATGTCTGGTTGCAAAGTGGCTGATGGAGTTGGAGTTATGCTGGTAACTGGTGTTGGTATAAATACAGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATAATGGAGAAGAGACTCCATTGCAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGTGTAGTTGGGCTTTCTGTAGCTGTTTTAGTGCTAGCAGTCCTCTTGGGCAGATACTTTTCTGGCCATTCTACTGATGATGATGGAAACGTGGAATTTGTTGCCGGAAAAACTAAAGCAAGTACTGCAGTTGATGGCGTCATCAAAATTTTCACCATTGCAGTTACCATTGTGGTTGTCGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACCTTAACCCTGGCATACTCAATGCGGAAAATGATGAGAGACAAAGCCCTGGTTTGCAGGTTCGGAGGCTGTCAGCCTGTGAAACTATGGGCTCTGCGACAACAATATGCAATGACTGTAGTTGAGGCATATGTTGGAAGGAACAAATTAAATCCACCAGATGACTCATCAAAGTTAAATCCGGAAGTTTTATCCTTGATAAACGAGGGCATTGCCCAGAATACTACTGGAAATGTTTTTGTGCCTAAGGAAGGGGGAGAGGCAGAGATTTCAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAGTAAAGTTGGGTATGAATTTCAGTCTTCTCAGATCAAATACGACAGTTCTCCATGTCTTCCCCTTTAATTCCGAGAAAAAAAGAGGCGGTGTTGCTGTGAAGCTGGAGGGCTCTGGAGTACATATACATTGGAAAGGAGCTGCAGAAATACTTCTTGGAGCATGTACGCAATATCTTGATTCAGATGGTCATTTGCAATCCATTGAGGGAGAGAAGGTAGCTTTCAAGGAGGCTATTGATAACATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCTTACAGATCATATGAATTAGACAAAGTTCCATCTAATGAAGATGATTTGGCCCAATGGTCGTTACCAGAAAATGATCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGAAGCAGTGGAACTATGCTCTAAAGCTGGTGTCAAGGTACGCATGGTTACCGGAGACAACCTTCAAACAGCAAGGGCAATAGCTTTGGAGTGTGGGATACTTACTTCAAATGAGGAAGCTGTTGAACCAGTTATAATTGAAGGGAAGAAATTCCGTGCACTAAGCGAAAAAGAAAGGGAACAGATTGCTAAGAAAATAACGGTCATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCTCTACGTAAAGGAGGTGAAGTTGTTGCCGTCACAGGAGATGGAACCAATGATGCCCCTGCACTTCACGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTTGCGTCAGTAGTAAAGGTTGTCCGGTGGGGACGTTCTGTTTATGCAAATATTCAGAAATTCATCCAGTTCCAGCTTACTGTTAATGTTGCTGCTCTTGTAATTAATGTTGTTGCAGCAATATCCTCTGGTGATGTTCCTTTGAATGCAGTACAGCTTCTGTGGGTCAACCTTATCATGGACACACTTGGGGCGCTTGCACTGGCCACTGAACCACCAACGGACAGCCTTATGCGCAGAGCACCTGTTGGGCGAAGGGAACCTCTTATAACGAATGTCATGTGGAGAAACTTGGTTGTACAGGCTGTCTATCAAGTTACTGTTCTTCTGGTTCTGAACTTCGCTGGTGAAAGTTTCATACCTAAGCAAGAAACTAAATCCCTTGACAGTCAAACCAAGAACACTTTAATATTCAATGCATTCGTCCTGTGCCAAATATTCAACGAGTTCAATGCTCGGAAACCAGAAGGAATGAATGTATTCCAAGGGGTGACTAAGAACCGTCTTTTCATGGGAATTGTTGGAATGACCTTTATCCTTCAGATAATTATCATCGAGTTCCTTGGAAAGTTCACCAAAACAGTGAAACTTGATTGGAAGCTGTGGATTGCTTCTCTTGTTATTGGCATTGTCAGCTGGCCTCTTGCTGTTGCCGGAAAACTCATTCCGGTTCCCAAAACACCATTGTCACGCTGCTTAGCCAAGCCACTTAGAAGATGGAGAAGGGAAGAAAAGAAAAACATGCTGCGACGCAGGTTTATTGAGGCAATGCGTCGAGCACCTTCTGCCCACCTCCGTTTCAGATTCCTTTGCACCCAATCACCGCGACAATCCTCCGAAAGCGATTCCGAGAGCCCTCAGAACTCAGAGAGCTTGTCTAGAAGGATCGAGAAGCTTCGGAAAGGGGAGGCTGTTGGGTCTGCCTTCCGCACTTGGATGGGCGATGGATTCCCCGTTCACAGAGGCCATGTCTTCCACGCCATCAACCGTCTTCGCAAGCTCAACATGAACAAACGCGCACTTGAGGTGATGGAATGGGTGATCCGAGAGAGGCCCTATAGGCCTAGGGAACTTGATTACTCTTATCTTGTGGAATTCACAATTAAGCTTCATGGGATTGAACATGGTGAGAAGCTCTTCCCTCGAATTCCACCTGAGTTTCAGAATGAGTTGCTATACAACAATCTGGTCATTGCAATGCTGGATAAAGGTGTCATAAAGCTTTCACTTGAGTACATGAAGAAAATGAGGGAGTTGGCTTATCCCATCTCACATTTGGTCTTCAACCGCCTCATAATCCTGCATTCCTCTCCCTCCAGGAAGAAGTTGATTCCGAAATTGCTCACGCAGATGAAGGCAGATAAGGTCACCCCCCACGTGTCCACCTACAATATTCTGATGAAAATAGAAGCCAATGAACATGATCTTGAAGCCTTGGTAAAGGTCTTTGCTCAGATGAAGAAGGCACAGGTTGAACCGAACGAGATCTCTTACTGCATTTTAGCTATTGCTCATGCAGTGGCAAGGTTGTATACTGCAACTGAAGCATATGTTCAAGCTGTGGAAAAGTCTATTACAGGGAACAATTGGTCAACATTCGATGTTCTACTTATATTGTATGGATATTTGGGGAGCCCAAAGGAGCTTGAAAGAGTTTGGGGAATCATGCAGGAACTCCCCTTGGTTAGATCGAAAAGTTACATGTTAGCAATTGAAGCATTTGGTAGAATCCGACATCTGAACCGTGCTGAAGAACTTTGGTTAGAAATGGAAACTAGAAAAGGGTTGAAATCCGTAGAGCAATTCAATTCGATGATGTCTGTATATTGCAAGCATGGATTGGTTGATAAAGCAACTAGGTTGTATAGAAACATGAAGGCAAATGGCTGCAAACCAAATGCAATAACTTATCGTCAACTTGCTCTGGGTTGCTTGAAATCTGGTTTGACAGAGCAAGGCTTAAAGACATTAGACTTGGGCATGGGGATGAAAATTAGTAAGAGGGTTAGAAATTCAACCCCATGGTTGGAGACCACCCTTTCAATTGTTGAGATTTTTGCAGAGAAAGGTGATGTTGAAAATGCTGAGAGATTGTTTGAAGAATTTCATAAGGCTAAGTATTGTAGGTATACTTTTGTATATAATACCCTTATTAAGGCTTATGTAAAAGCCAAGATTTATGATCCAAATTTTTTAAGAAGGATGGTCCTTGGAGGAGCTAGGCCAGATGCTGAAACTTATAGTCTCTTGAAAGTTGCTGAGCAGTTTAGGACCTGA 4632 0.4385 MTNGHITVTVDTRHSDATEQRRIPPPPPAAAAASAAVNLDYDDDDHNDDDDVADPNDPFDIQHTKHAPIETLRRWRQAALVLNASRRFRYTLDLKKEEERQQKKSLIRAHAQVIRAALLFRLAGERELVVTAPTPAHPVGDFGIGLEQLSSVSKEQNTAALEEYGGASQGLIKFIKRFLWEAWQDLTLIILIIAAVVSLVLGIKTEGLSEGWYDGGSIAFAVFLVIVVTAVSDYRQSLQFKNLNAEKQNIQLEVMRGGRTVKLSIFDIVVGDVVPLKIGDQVHKDHKSPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDNGEETPLQVRLNGVATFIGVVGLSVAVLVLAVLLGRYFSGHSTDDDGNVEFVAGKTKASTAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMRDKALVCRFGGCQPVKLWALRQQYAMTVVEAYVGRNKLNPPDDSSKLNPEVLSLINEGIAQNTTGNVFVPKEGGEAEISGSPTEKAILSWAVKLGMNFSLLRSNTTVLHVFPFNSEKKRGGVAVKLEGSGVHIHWKGAAEILLGACTQYLDSDGHLQSIEGEKVAFKEAIDNMAARSLRCVAIAYRSYELDKVPSNEDDLAQWSLPENDLVLLAIVGIKDPCRPGVKEAVELCSKAGVKVRMVTGDNLQTARAIALECGILTSNEEAVEPVIIEGKKFRALSEKEREQIAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMRRAPVGRREPLITNVMWRNLVVQAVYQVTVLLVLNFAGESFIPKQETKSLDSQTKNTLIFNAFVLCQIFNEFNARKPEGMNVFQGVTKNRLFMGIVGMTFILQIIIIEFLGKFTKTVKLDWKLWIASLVIGIVSWPLAVAGKLIPVPKTPLSRCLAKPLRRWRREEKKNMLRRRFIEAMRRAPSAHLRFRFLCTQSPRQSSESDSESPQNSESLSRRIEKLRKGEAVGSAFRTWMGDGFPVHRGHVFHAINRLRKLNMNKRALEVMEWVIRERPYRPRELDYSYLVEFTIKLHGIEHGEKLFPRIPPEFQNELLYNNLVIAMLDKGVIKLSLEYMKKMRELAYPISHLVFNRLIILHSSPSRKKLIPKLLTQMKADKVTPHVSTYNILMKIEANEHDLEALVKVFAQMKKAQVEPNEISYCILAIAHAVARLYTATEAYVQAVEKSITGNNWSTFDVLLILYGYLGSPKELERVWGIMQELPLVRSKSYMLAIEAFGRIRHLNRAEELWLEMETRKGLKSVEQFNSMMSVYCKHGLVDKATRLYRNMKANGCKPNAITYRQLALGCLKSGLTEQGLKTLDLGMGMKISKRVRNSTPWLETTLSIVEIFAEKGDVENAERLFEEFHKAKYCRYTFVYNTLIKAYVKAKIYDPNFLRRMVLGGARPDAETYSLLKVAEQFRT* 1544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0099 1543 Pfam haloacid dehalogenase-like hydrolase 587 760 - -
Amo19g0099 1543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1244 1278 IPR002885 -
Amo19g0099 1543 SUPERFAMILY Calcium ATPase, transduction domain A 251 320 IPR008250 -
Amo19g0099 1543 MobiDBLite consensus disorder prediction 40 59 - -
Amo19g0099 1543 Gene3D - 496 646 IPR023299 GO:0000166
Amo19g0099 1543 PANTHER CATION TRANSPORTING ATPASE 176 282 - -
Amo19g0099 1543 PANTHER CATION TRANSPORTING ATPASE 282 1023 - -
Amo19g0099 1543 Pfam PPR repeat family 1243 1286 IPR002885 -
Amo19g0099 1543 Pfam PPR repeat family 1385 1429 IPR002885 -
Amo19g0099 1543 Pfam Ca2+-ATPase N terminal autoinhibitory domain 56 99 IPR024750 GO:0005516
Amo19g0099 1543 Gene3D Tetratricopeptide repeat domain 1444 1543 IPR011990 GO:0005515
Amo19g0099 1543 Pfam E1-E2 ATPase 287 426 - -
Amo19g0099 1543 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 288 1009 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Amo19g0099 1543 MobiDBLite consensus disorder prediction 1058 1075 - -
Amo19g0099 1543 Gene3D - 647 791 IPR023214 -
Amo19g0099 1543 PANTHER CALCIUM-TRANSPORTING ATPASE 176 282 - -
Amo19g0099 1543 PANTHER CALCIUM-TRANSPORTING ATPASE 282 1023 - -
Amo19g0099 1543 SUPERFAMILY HAD-like 588 851 IPR036412 -
Amo19g0099 1543 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 450 651 IPR023299 GO:0000166
Amo19g0099 1543 Gene3D Tetratricopeptide repeat domain 1108 1348 IPR011990 GO:0005515
Amo19g0099 1543 Gene3D - 792 997 - -
Amo19g0099 1543 PANTHER CATION TRANSPORTING ATPASE 55 175 - -
Amo19g0099 1543 Pfam Cation transporting ATPase, C-terminus 831 1006 IPR006068 -
Amo19g0099 1543 Pfam Cation transport ATPase (P-type) 496 573 - -
Amo19g0099 1543 Gene3D - 178 438 - -
Amo19g0099 1543 MobiDBLite consensus disorder prediction 1058 1078 - -
Amo19g0099 1543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1383 1417 IPR002885 -
Amo19g0099 1543 Gene3D - 68 121 - -
Amo19g0099 1543 TIGRFAM PPR: pentatricopeptide repeat domain 1387 1419 IPR002885 -
Amo19g0099 1543 PANTHER CALCIUM-TRANSPORTING ATPASE 55 175 - -
Amo19g0099 1543 Gene3D Tetratricopeptide repeat domain 1349 1443 IPR011990 GO:0005515
Amo19g0099 1543 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 712 826 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo19g0099 1543 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1009 IPR023298 -
Amo19g0099 1543 MobiDBLite consensus disorder prediction 1 34 - -
Amo19g0099 1543 PRINTS P-type cation-transporting ATPase superfamily signature 770 782 - -
Amo19g0099 1543 PRINTS P-type cation-transporting ATPase superfamily signature 639 650 - -
Amo19g0099 1543 PRINTS P-type cation-transporting ATPase superfamily signature 661 671 - -
Amo19g0099 1543 PRINTS P-type cation-transporting ATPase superfamily signature 746 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0099 Amo-Chr19 962701 976254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0099 2 1026 Primary Pumps ATPases AT3G21180 66.819 0.0 1413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0099 K01537 - gmx:100777143 1518.06