Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0083 ATGATGGCGAAGAAGAAAACCCTCATCATCAAGAATAATGATAGTAATAGTAGTTCTTCTTCTTCTGCTCCCACACCATCAAAGAAAGTTGTGAAAAAAAGAACTCGCAAAACCATTCCAAGAGATTCACCTCCTCAACGAAGCTCTGTCTACCGTGGTGTCACTAGACATCGATGGACGGGTCGTTACGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCACAGACTAAGAAAGGAAGACAAGTATATCTAGGAGCATATGATGATGAAGAAGCGGCTGCACGTGCTTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGAAACCATACTCAATTTCCCAGCATCAAATTATCAAGAGGAGCTCAAGGACATGGAGGGACAGTCTAAAGAAGAATACATTGGATCCTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGTCTCAAAATACAGAGGGGTAGCAAGACACCACCACAATGGAAGATGGGAAGCTAGAATTGGCAGGGTCTTCGGCAACAAATATCTATATCTTGGAACTTATGCTACACAAGAGGAAGCTGCAATGGCATATGACATGGCTGCCATAGAATATCGTGGACTTAATGCTGTTACAAACTTTGATCTTAGCCATTACATCAATTGGCTACGTCCTAAACTCCAAGAAATTCAGAAAAACCCTAGCCAAAATAATCAAGAACAATCGTCTAGTGGTTCCGAACTCGATAATAATCAATTAGTATTTGGTTATGATCAGGCCGGTTTAACCACCAGCGAAACTGGGTCTGAAGACTCGACCCAGTTTAAAACTGGTGGTGAAACCGTGCCAACTTCGGCACTCGAGATCCTCTTAAAATCGTCGAAATTAAAAGAAATGTTAGTACGAAATTCGGTTGACGAAGATAATCTTCACTCTCAAACATCTTCGGAATCAAACCCTACTCCTCGGCGCACATTTCCGGAAGACATTCAAACGTTCTTTGAGAGCCATGATTCCAATCTCTACACTGAAAATGATGACATTATATTTGGCGAATTGGGCTCAATTTCAGCACCATTTTTTCAGTATGAGCTTGATGCTTGA 1089 0.4141 MMAKKKTLIIKNNDSNSSSSSSAPTPSKKVVKKRTRKTIPRDSPPQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQTKKGRQVYLGAYDDEEAAARAYDLAALKYWGQETILNFPASNYQEELKDMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAMAYDMAAIEYRGLNAVTNFDLSHYINWLRPKLQEIQKNPSQNNQEQSSSGSELDNNQLVFGYDQAGLTTSETGSEDSTQFKTGGETVPTSALEILLKSSKLKEMLVRNSVDEDNLHSQTSSESNPTPRRTFPEDIQTFFESHDSNLYTENDDIIFGELGSISAPFFQYELDA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0083 362 MobiDBLite consensus disorder prediction 299 321 - -
Amo19g0083 362 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Amo19g0083 362 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
Amo19g0083 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 346 - -
Amo19g0083 362 MobiDBLite consensus disorder prediction 9 28 - -
Amo19g0083 362 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Amo19g0083 362 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Amo19g0083 362 MobiDBLite consensus disorder prediction 301 321 - -
Amo19g0083 362 SUPERFAMILY DNA-binding domain 49 118 IPR016177 GO:0003677
Amo19g0083 362 MobiDBLite consensus disorder prediction 1 50 - -
Amo19g0083 362 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Amo19g0083 362 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Amo19g0083 362 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700|GO:0006355
Amo19g0083 362 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Amo19g0083 362 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Amo19g0083 362 Pfam AP2 domain 49 108 IPR001471 GO:0003700|GO:0006355
Amo19g0083 362 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Amo19g0083 362 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Amo19g0083 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0083 Amo-Chr19 836626 842972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0083 13 214 AP2-EREBP Transcription Factor Family AT1G72570 62.381 1.54e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo19g0083 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0083 K09285 - twl:120011595 431.024