Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0052 ATGACCAACGGCCACATAACCGTAACCGTCGACACCAGGCATTCTGACGCCACCGAACAGCGACGCATTCCTCCTCCTCCTCCTGCTGCTGCTGCTGCTTCCGCTGCCGTCAATCTCGACTATGACGACGACGACCACAACGACGACGACGATGTTGCAGATCCAAATGATCCTTTCGATATTCAACACACCAAGCATGCGCCCATCGAGACCCTCCGCCGTTGGAGACAAGCAGCACTCGTGCTCAATGCATCAAGGCGCTTTAGATATACCTTGGACCTAAAAAAGGAAGAGGAGAGACAGCAAAAGAAAAGCTTGATTAGAGCCCATGCACAAGTCATAAGAGCAGCATTGCTTTTCAGATTGGCTGGTGAACGTGAATTAGTGGTAACAGCACCGACACCTGCACATCCAGTTGGTGACTTTGGAATTGGGCTCGAACAACTTTCTTCAGTTTCTAAGGAGCAGAACACTGCTGCTTTAGAAGAATATGGAGGGGCAAGTCAAGGGCTTATCAAATTTATTAAGAGGTTTTTATGGGAAGCATGGCAAGATCTAACTCTTATAATATTGATTATAGCAGCAGTTGTCTCATTGGTGCTTGGAATAAAAACAGAGGGTTTGAGTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCGGTTTTTCTGGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTAAGAATTTGAATGCAGAGAAACAAAATATACAGTTGGAGGTCATGAGAGGTGGCAGAACAGTTAAATTGTCGATATTTGACATTGTTGTTGGTGATGTAGTACCGCTTAAAATAGGAGATCAGGTTCACAAGGATCACAAATCACCCTTTTTGATGTCTGGTTGCAAAGTGGCTGATGGAGTTGGAGTTATGCTGGTAACTGGTGTTGGTATAAATACAGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATAATGGAGAAGAGACTCCATTGCAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGTGTAGTTGGGCTTTCTGTGGCTGTTTTAGTGCTAGCAGTCCTCTTGGGCAGATACTTTTCTGGCCATTCTACTGATGATGATGGAAACGTGGAATTTGTTGCTGGAAAAACTAAAGCAAGTACTGCAGTTGATGGCGTCATCAAAATTTTCACCATTGCAGTTACCATTGTGGTTGTCGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACCTTAACCCTGGCATACTCAATGCGGAAAATGATGAGAGACAAAGCCCTGGTTTGCAGGTTCGGAGGCTGTCAGCCTGCGAAACTATGGGATCTGCGACAACAATATGCAATGACTGTAGTTGAGGCATATGTTGGAAGGAACAAATTAAATCCACCAGATGACTCATCAAAGTTAAATCCGGAAGTTTTATCCTTGATAAACGAGGGCATTGCCCAGAATACTACTGGAAATGTTTTTGTGCCTAAGGGGAGAGGGAGATATTCAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAGTAAAGTTGGGTATGAATTTTAGTCTTCTCAGATCAAATACGACAGTTCTCCATGTCTTCCCCTTTAATTCCGAGAAAAAAAGAGGCGGTGTTGCTGTGAAGCTGGAGGGCTCTGGAGTACATATACATTGGAAAGGAGCTGCAGAAATACTTCTTGGAGCATGTACGCAATATCTTGATTCAGATGGTCATTTGCAATCCATTGAGGGAGAGCAGGTAGCTTTCAAGGAGGCGATTGATAACATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCTTACAGATCATATGAATTAGACAAAGTTCCATCTAATGAAGATGATTTGGAGCAATGGTCGTTACCAGAAAATGATCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGAAGCAGTGGAACTATGCACTAAAGCTGGTGTCAAGGTACGCATGGTTACCGGAGACAACCTTCAAACAGCAAGGGCAATAGCTTTGGAGTGTGGGATACTTACTTCAAATGAGGAAGCTGTTGAACCAGTTATAATTGAAGGGAAGAAATTCCGTGCACTAAGCGAAAAAGAAAGGGAACAGATTGCTAAGAAAATAACGGTCATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCTCTACGTAAAGGAGGTGAAGTTGTTGCCGTCACAGGAGATGGAACCAATGATGCCCCTGCACTTCACGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTTGCGTCAGTAGTAAAGGTTGTCCGGTGGGGACGTTCTGTTTATGCAAATATTCAGAAATTCATCCAGTTCCAGCTTACTGTTAATGTTGCTGCTCTTGTAATTAATGTTGTTGCAGCAATATCCTCTGGTGATGTTCCTTTGAATGCAGTACAGCTTCTGTGGGTCAACCTTATCATGGACACACTTGGGGCGCTTGCACTGGCCACTGAACCACCAACGGACAGCCTTATGCGCAGAGCACCTGTTGGGCGAAGGGAACCTCTTATAACGAATGTCATGTGGAGAAACTTGGTTGTACAGGCTGTCTATCAAGTTACTGTTCTTCTKGTTCTGAACTTYGCTGGTGAAAGTTTCATACCTAAGCAAGAAACTAAATCCCTTGACAGTCAAACCAAGAACACKTTAATATTCAATGCATTCGTCCTGTGCCAAATATTCAACGAGTTCAATGCTCGGAAACCAGAAGGAATGAATGTATTCCAAGGGGTGACTAAGAACCGTCTWTTCATGGGAATTGTTGGAATGACCTTTATCCTTCAGATAATTATCATCGAGTTCCTTGGAAAGTTCACCAAAACAGTGAAACTTGATTGGAAGCTGTGGATTGCTTCTCTTGTTATTGGCATTGTCAGCTGGCCTCTTGCTGTTGCCGGAAAACTCATTCCGGTTCCCAAAACACCATTGTCACGCTGCTTAGCCAAGCCACTTAGAAGATGGAGAAGGGAAGAAAAGAAAAACATGCTGCGACGCAGGTTTATTGAGGCAATGCGTCGAGCACCTTCTGCCCACCTCCGTTTCAGATTCCTTTGCACCCAATCACCGCGAGAGTTCTCCGAAAGCGATTCCGAGAGCCCTCAGAACTCAGAGAGCTTGTCTAGAAGGATCGAGAAGCTTCGGAAAGGGGAGGCTGTTGGGTCTGCCTTCCGCACTTGGATGGGCGATGGATTCCCCGTTCACAGAGGCCATGTCTTCCACGCCATCAACCGTCTTCGCAAGCTCAACATGAACAAACGCGCACTTGAGGTGATGGAATGGGTGATCCGAGAGAGGCCCTATAGGCCTAGGGAACTTGATTACTCTTATCTTGTCGAATTCACAATTAAGCTTCATGGGATTGAACATGGTGAGAAGCTCTTCCCTCGAATTCCACCTGAGTTTCAGAATGAGTTGCTATACAACAATCTGGTCATTGCAATGCTGGATAAAGGTGTCATAARGCTTTCACTTGASTACATGAAGAAAATGAGGGAGYTGGCTTATCCCATCTCACATTTGGTCTTCAACCGCCTCATAATCCTGCATTCCTCTCCCTCCAGGAAGAAGTTGATTCCGAAATTGCTCACGCAGATGAAGGCAGATAAGGTCACCCCCCACGTGTCCACCTACAATATTCTGATGAAAATAGAAGCCAATGAACATGATCTTGAAGCCTTGGTAAAGGTCTTTGCTCAGATGAAGAAGGCACAGGTTGAACCCAACGAGATCTCTTACTGCATTTTAGCTATTGCTCATGCAGTGGCAAGGCTGTATACTGCAACTGAAGCATATGTTCAAGCTGTGGAAAAGTCTATTACAGGGAACAATTGGTCAACATTCGATGTTCTACTTGTATTGTATGGATATTTGGGGAGCCCAAAGGAGCTAGAAAGAGTTTGGGGAATCATTCAGGAACTCCCCTTGGTTAGATCGAAAAGTTACATGTTAGCTATTGAAGCATTTGGTAGAATCGGACATCTGAACCGTGCTGAAGAACTTTGGTTAGAAATGGAAACTAGAAAAGGGTTGAAATCCGTAGAGCAATTCAATTCGATGATGTCTGTATATTGCAAGCATGGATTGGTTGATAAAGCAACTAGGTTGTATAGAAACATGAAGGCAAATGGSTGCAAACCAAATGCAATAACTTATCGTCAACTTGCTCTGGGTTGCTTGAAATCTGGTTTGAYAGAGCAAGGYTTAAAGACATTAGACTTGGGCATGGGGATGAAAATTAGTAAGAGGGTTAGAAATTCAACCCCATGGTTGGAGACCACCCTTTCAATTGTTGAGATTTTTGCAGAGAARGGTGATGTTGAAAATGCTGAGAGATTGTTTGAAGAATTTCACAAGGCTAAGTATTGTAGGTATACTTTTGTATATAATACCCTTATTAAGGCTTATGTAAAAGCCAAGATTTATGATCCAAATTTTTTAAGAAGGATGATCCTCGGAGGAGCTAGGCCAGATGCTGAAACTTATAGTCTCTTGAAAGTTGCTGAGCAGTTTAGGACCTGA 4626 0.4373 MTNGHITVTVDTRHSDATEQRRIPPPPPAAAAASAAVNLDYDDDDHNDDDDVADPNDPFDIQHTKHAPIETLRRWRQAALVLNASRRFRYTLDLKKEEERQQKKSLIRAHAQVIRAALLFRLAGERELVVTAPTPAHPVGDFGIGLEQLSSVSKEQNTAALEEYGGASQGLIKFIKRFLWEAWQDLTLIILIIAAVVSLVLGIKTEGLSEGWYDGGSIAFAVFLVIVVTAVSDYRQSLQFKNLNAEKQNIQLEVMRGGRTVKLSIFDIVVGDVVPLKIGDQVHKDHKSPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDNGEETPLQVRLNGVATFIGVVGLSVAVLVLAVLLGRYFSGHSTDDDGNVEFVAGKTKASTAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMRDKALVCRFGGCQPAKLWDLRQQYAMTVVEAYVGRNKLNPPDDSSKLNPEVLSLINEGIAQNTTGNVFVPKGRGRYSGSPTEKAILSWAVKLGMNFSLLRSNTTVLHVFPFNSEKKRGGVAVKLEGSGVHIHWKGAAEILLGACTQYLDSDGHLQSIEGEQVAFKEAIDNMAARSLRCVAIAYRSYELDKVPSNEDDLEQWSLPENDLVLLAIVGIKDPCRPGVKEAVELCTKAGVKVRMVTGDNLQTARAIALECGILTSNEEAVEPVIIEGKKFRALSEKEREQIAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMRRAPVGRREPLITNVMWRNLVVQAVYQVTVLLVLNFAGESFIPKQETKSLDSQTKNTLIFNAFVLCQIFNEFNARKPEGMNVFQGVTKNRLFMGIVGMTFILQIIIIEFLGKFTKTVKLDWKLWIASLVIGIVSWPLAVAGKLIPVPKTPLSRCLAKPLRRWRREEKKNMLRRRFIEAMRRAPSAHLRFRFLCTQSPREFSESDSESPQNSESLSRRIEKLRKGEAVGSAFRTWMGDGFPVHRGHVFHAINRLRKLNMNKRALEVMEWVIRERPYRPRELDYSYLVEFTIKLHGIEHGEKLFPRIPPEFQNELLYNNLVIAMLDKGVIXLSLXYMKKMRELAYPISHLVFNRLIILHSSPSRKKLIPKLLTQMKADKVTPHVSTYNILMKIEANEHDLEALVKVFAQMKKAQVEPNEISYCILAIAHAVARLYTATEAYVQAVEKSITGNNWSTFDVLLVLYGYLGSPKELERVWGIIQELPLVRSKSYMLAIEAFGRIGHLNRAEELWLEMETRKGLKSVEQFNSMMSVYCKHGLVDKATRLYRNMKANGCKPNAITYRQLALGCLKSGLXEQGLKTLDLGMGMKISKRVRNSTPWLETTLSIVEIFAEKGDVENAERLFEEFHKAKYCRYTFVYNTLIKAYVKAKIYDPNFLRRMILGGARPDAETYSLLKVAEQFRT* 1542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0052 1541 MobiDBLite consensus disorder prediction 1 62 - -
Amo19g0052 1541 PANTHER CALCIUM-TRANSPORTING ATPASE 55 173 - -
Amo19g0052 1541 Pfam PPR repeat family 1383 1427 IPR002885 -
Amo19g0052 1541 Pfam PPR repeat family 1241 1284 IPR002885 -
Amo19g0052 1541 SUPERFAMILY Calcium ATPase, transduction domain A 251 320 IPR008250 -
Amo19g0052 1541 Gene3D - 450 644 IPR023299 GO:0000166
Amo19g0052 1541 PRINTS P-type cation-transporting ATPase superfamily signature 637 648 - -
Amo19g0052 1541 PRINTS P-type cation-transporting ATPase superfamily signature 659 669 - -
Amo19g0052 1541 PRINTS P-type cation-transporting ATPase superfamily signature 768 780 - -
Amo19g0052 1541 PRINTS P-type cation-transporting ATPase superfamily signature 744 763 - -
Amo19g0052 1541 PANTHER CATION TRANSPORTING ATPASE 55 173 - -
Amo19g0052 1541 SUPERFAMILY HAD-like 586 849 IPR036412 -
Amo19g0052 1541 Pfam Cation transporting ATPase, C-terminus 829 1004 IPR006068 -
Amo19g0052 1541 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 288 1007 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Amo19g0052 1541 Pfam E1-E2 ATPase 287 426 - -
Amo19g0052 1541 Gene3D Tetratricopeptide repeat domain 1349 1540 IPR011990 GO:0005515
Amo19g0052 1541 Gene3D Tetratricopeptide repeat domain 1103 1348 IPR011990 GO:0005515
Amo19g0052 1541 Gene3D - 697 1006 - -
Amo19g0052 1541 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 450 649 IPR023299 GO:0000166
Amo19g0052 1541 Pfam Cation transport ATPase (P-type) 492 571 - -
Amo19g0052 1541 PANTHER CATION TRANSPORTING ATPASE 176 282 - -
Amo19g0052 1541 PANTHER CATION TRANSPORTING ATPASE 282 1021 - -
Amo19g0052 1541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1381 1415 IPR002885 -
Amo19g0052 1541 Gene3D - 178 438 - -
Amo19g0052 1541 PANTHER CALCIUM-TRANSPORTING ATPASE 176 282 - -
Amo19g0052 1541 PANTHER CALCIUM-TRANSPORTING ATPASE 282 1021 - -
Amo19g0052 1541 Gene3D - 68 121 - -
Amo19g0052 1541 Pfam PPR repeat 1349 1376 IPR002885 -
Amo19g0052 1541 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1007 IPR023298 -
Amo19g0052 1541 Pfam Ca2+-ATPase N terminal autoinhibitory domain 56 99 IPR024750 GO:0005516
Amo19g0052 1541 Pfam haloacid dehalogenase-like hydrolase 584 758 - -
Amo19g0052 1541 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 710 824 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo19g0052 1541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1242 1276 IPR002885 -
Amo19g0052 1541 TIGRFAM PPR: pentatricopeptide repeat domain 1385 1417 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0052 Amo-Chr19 602783 616335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0052 2 1024 Primary Pumps ATPases AT3G21180 66.454 0.0 1397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0052 K01537 - gmx:100777143 1504.19