Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0049 ATGGATGGTATTCATGGGGGTGATTCTCGGATACACTTGAGTGAGGGACAGCATCCTATGCATGTGCCATACGTGCAAGAACACGAGCATCATGGATTGCATCATATGAGTAACGGGAATGGGATGGAAGATGATCAGAATAATGGTGATGATACTAACTGCGGTGGAAGTGAGAGTGTTGAAGGTGAAATCCCTTCTAATCATGGAAACCTGCCTGAGAATCACACGGCGATGATCGATCAAGGGGGTGATGTTGGGGATCAACTTACATTGTCTTTTCAGGGCCAAGTTTATGTATTTGACTCTGTGTCGCCGGAAAAGGTTCAAGCTGTACTACTACTATTGGGAGGCCGTGAAGTACCTCCAACTATGCCTGCCATGCCAATATTGCCCCACCAAAGTAACCAGGGATTTACTGGTACTCCACAAAAGTTCAGCGTCCCTCAAAGATTAGCCTCATTGCTAAGATTTCGTGAAAAAAGGAAAGAAAGAAATTTTGACAAAAAAATTCGCTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCTAAGCCCAATCATGATGAATCTGCATCAGGTGCAGCAAACTGGGGGGCAAATGAAAGCTGGTCATCAGATAACAATGGATCTCAACAAGATATCGTTTGTCGGCACTGCGGCATTAGTGAGAAGTGCACACCGATGATGCGACGTGGACCTGAAGGGCCAAGAACACTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAACTCTTAGGGACCTATCGAGAGCCGCGTCCATGGCTGGACATAATTCTCAGTTAAACAAGAATGAGAATAAAGATTTTGAGGCCAATCAGATGGTACAAACAGTGGCAGCTGATGTTGAGGATTCTTCATGA 912 0.443 MDGIHGGDSRIHLSEGQHPMHVPYVQEHEHHGLHHMSNGNGMEDDQNNGDDTNCGGSESVEGEIPSNHGNLPENHTAMIDQGGDVGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPAMPILPHQSNQGFTGTPQKFSVPQRLASLLRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPNHDESASGAANWGANESWSSDNNGSQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAASMAGHNSQLNKNENKDFEANQMVQTVAADVEDSS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0049 303 Gene3D - 218 269 IPR013088 GO:0006355|GO:0008270
Amo19g0049 303 PANTHER GATA TRANSCRIPTION FACTOR 28 6 289 IPR045280 GO:0006355
Amo19g0049 303 ProSiteProfiles GATA-type zinc finger domain profile. 219 277 IPR000679 GO:0006355|GO:0043565
Amo19g0049 303 MobiDBLite consensus disorder prediction 30 74 - -
Amo19g0049 303 MobiDBLite consensus disorder prediction 40 74 - -
Amo19g0049 303 Pfam CCT motif 150 192 IPR010402 GO:0005515
Amo19g0049 303 PANTHER GATA TRANSCRIPTION FACTOR 28 6 289 - -
Amo19g0049 303 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Amo19g0049 303 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Amo19g0049 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 283 - -
Amo19g0049 303 Pfam GATA zinc finger 225 261 IPR000679 GO:0006355|GO:0043565
Amo19g0049 303 MobiDBLite consensus disorder prediction 184 218 - -
Amo19g0049 303 SMART tify_2 82 117 IPR010399 -
Amo19g0049 303 CDD ZnF_GATA 224 266 IPR000679 GO:0006355|GO:0043565
Amo19g0049 303 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Amo19g0049 303 Pfam tify domain 88 116 IPR010399 -
Amo19g0049 303 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0049 Amo-Chr19 580704 584098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0049 1 302 Tify Gene Family AT1G51600 62.866 2.50e-136 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo19g0049 CCT 3.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0049 - - pvu:PHAVU_008G254600g 529.635