Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0045 ATGGCTGACCATGGCATCACCATGTCACTTTCCCACACCTCCGACGACGACTCCTCCGACCACAACACCCCTGCCACCGCTGCTGCCGTCGTCTCCAGGAGGCTGCCACCCTCGTCCTCCACCGGCAACCATTCATACCACCATCACCTCTCCGAGCCCCCGCCCCAGAAGAAGCCACGTGGCAGGCCTCCGGGGTCCAAGAATAAGCCGAAGCCACCCGTGGTGATCACTCAGGAAAGCGACCACGTGATGAAACCGGTGGTGATCGAGGTTGCCGCCGGCTCCGACGTGGTGGAGGCGGTGGTGAGTTTTGCCCGCCGGCGCCAGGTAAGCTTGTCAGTGTTGAGTGGGTCAGGAACCATTGCGAACGTCACCTTACGTCACCCTTACTCACATGCTCCTGCATTAACCCTCCATGGACCCTTCACCTTGTTGTCGTTCTCTGGAAGCTACATCGCTGGCCCTTTCACTCCTTCACCTCGTCCTCTTCCTCTTCCTCTTCCTCTTGCCTCTCCAGCTTCCGCTTCCGCTTCAACGGATGCTTCCTCAGCCAGCCCTACCCCCACCTGCTCCAGCTTCGCTGTTTCCTTCTCCGGTTCCCAGGGACAGATCTTCGGCGGGGTTGTGGCTGGGACACTCGTGGCGGCCAGCACGGTTGTGGTCTCGGCCTCCGTCTTCAAGAGGCCTGAGTTCCACCAGGTTGGCGAGGGTGTGAGTGCTGGTGGGCGTGACGGTGATAATAAGGACGATGGTGATCGTCATAATAACTACAGTAATGCAGTTGTGAGTGAGAACCCTCTTACTGTGTTCAATGTGGGGAATGGCGGTGGTGGAGGAAACGGCATGAATAATAGCCACCCTGCTGATGTGAACGTCATGCAATGGGGCCACACTCTCTCGGCTTCTCGCGCTGCCAATTACTGA 924 0.5855 MADHGITMSLSHTSDDDSSDHNTPATAAAVVSRRLPPSSSTGNHSYHHHLSEPPPQKKPRGRPPGSKNKPKPPVVITQESDHVMKPVVIEVAAGSDVVEAVVSFARRRQVSLSVLSGSGTIANVTLRHPYSHAPALTLHGPFTLLSFSGSYIAGPFTPSPRPLPLPLPLASPASASASTDASSASPTPTCSSFAVSFSGSQGQIFGGVVAGTLVAASTVVVSASVFKRPEFHQVGEGVSAGGRDGDNKDDGDRHNNYSNAVVSENPLTVFNVGNGGGGGNGMNNSHPADVNVMQWGHTLSASRAANY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0045 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 232 - -
Amo19g0045 307 MobiDBLite consensus disorder prediction 33 47 - -
Amo19g0045 307 MobiDBLite consensus disorder prediction 1 79 - -
Amo19g0045 307 CDD DUF296 85 221 IPR005175 -
Amo19g0045 307 PIRSF ESCAROLA 173 306 IPR014476 GO:0003680
Amo19g0045 307 PIRSF ESCAROLA 2 175 IPR014476 GO:0003680
Amo19g0045 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 298 IPR014476 GO:0003680
Amo19g0045 307 ProSiteProfiles PPC domain profile profile. 81 248 IPR005175 -
Amo19g0045 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 298 - -
Amo19g0045 307 MobiDBLite consensus disorder prediction 235 255 - -
Amo19g0045 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 227 IPR005175 -
Amo19g0045 307 Gene3D - 84 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0045 Amo-Chr19 550737 551693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0045 57 234 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 45.556 1.75e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0045 - - ahf:112712816 447.588