Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0042 ATGGCGTTCATCGAGGACGGCATCGACCTGGACGCGTCGGACTTCGCGGCGTCAGTTCCGCTGAAGAAGGTCCCAAACGGGGACGTGTTCGAGGCGTCGAGGGCGGGGGACGTGGAGCGGCTGCGCTACCTGCTGGAGTCTGGTGTCAATGTGAACGCCCGCGACCAGTGGGACTCCGTTGCTCTCTACTACGCCTGCCTTGCCGGCCACCTCGACGCTGCCCGCATGCTTCTCGAGAGCGGCGCCATCTGCTCCGAGCACACCTTCGACGGCGACCGCTGCCACTACGCCGCCCTTAATCTCAAAGTCCGCAAACTCCTCAAGGCCTTTGAGGCCCGCCCCCCTCCCTTGGCCCCCTTGCAGGCCGCCCTCCGTGACACCTTCCTTTCCTCCCCCGCTAACCGCTCCTTCTATGACCTCTCAGACACCGACTTTCATCTTCCGGGTATTTCATCCACCCAGGGATCCAGCCGTGGCTATTTTCCTCCAGATGTAGTTTTTATTGTACATGGAAGGCCTATTGAAGCTCACAGAGTCATATTAAGCGCAAGGTCACCATTTTTTAAGAAAAAGTTTGAGACTGATTGGAAAGATCGCAGTGAAGTGAGATTGCCACGGGAAAAATTGTCATATCCTGCGCTCTACAGCCTTATACACTTCTTTTATTTGGACAGATTAGAGATTGCCGTGGATGACATGGAAGATCTTGTGAGAATCTGTAAAGTATGCAACCTCGAATCACTGCAGAAAATTCTCGAGAAAGAAGTCATTCATCAAAAGTATGCGGAATATAAAGCGTTGAAGGATGTAGATAATTCACAGAAACGATACATTTTGCAAGGTCTGTCCCTTCCTGTAGAAGACAGGCTTCCTGCAGCCTTGCACCTAATCCTTCAAACTGCCCTTTCAAATTCAACCCTTGGAAACGGTCAAGATGATGCAGTTGATAAATTGATTGCTGGGATAGGTGCTATGAAAATGGGTAGATCTATTGATGATCTTGCTGATGTATGTGTAAGAGTTGATGGGAAAAATTTCCGTTGCCATCAAGTGGTTCTTGCATCAAGGTCTGAATATTTTAAGACAAGATTGTTGCGTATGAAGGACTTCCATGAAGGGGAAGATGAGTTATATTTGGATTTACTTCCTTGCATTGAAGAGCATGATTTGAGTACAGATGCATTTGAGAAAATGATTGAATATATGTACACTGATGGCTTGCAGGATATAAACCCAGATCAGGCTGAGGAAATGTTTGACGTTGCTTCTAGATACTTATTATTTCCTCTTAAGCGTGCGGTGGCTGATGTGTTGTTGCCACACTTGGAGATGGTGTCACCCGAAGAACTGTGCCATTGGTTAATATTAGCAGACCTGTATGGTGTTTTCAAGTTTCGGGAATATTGTCTGGACACCATTGCTTGTAACTTTGAAACATTTGCTGATACCAAAGAGTTCAGGGCAATGCTGTTGACTTTCCCTCCACCATCTGGAGACTCCTCTCTTCGTACTACTGTCCCAAGCATGCCTGGATCTGATCTAAAATCGGATCAAGGAAACCTTCTCGATGATTTGCGCGAGAAATGGCTTGAAATTGAAGCTGCTGAGCTCGACGAGAGAGATGAGAGTGCGTTGCAATTTGATAAGCGGCTCGAGATGCTTATGCTTGTTGCTGAGCAAGAAAAATCCGATAATTCAGAAGCTGATGCTGATGGTATGGATGACCTCAAAACGTTGGGTTTGTCTCCAGACAGCACATTAATTTCAGGTGATGCAGAAAGAACTGTGATAAGTTAA 1797 0.4719 MAFIEDGIDLDASDFAASVPLKKVPNGDVFEASRAGDVERLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLAPLQAALRDTFLSSPANRSFYDLSDTDFHLPGISSTQGSSRGYFPPDVVFIVHGRPIEAHRVILSARSPFFKKKFETDWKDRSEVRLPREKLSYPALYSLIHFFYLDRLEIAVDDMEDLVRICKVCNLESLQKILEKEVIHQKYAEYKALKDVDNSQKRYILQGLSLPVEDRLPAALHLILQTALSNSTLGNGQDDAVDKLIAGIGAMKMGRSIDDLADVCVRVDGKNFRCHQVVLASRSEYFKTRLLRMKDFHEGEDELYLDLLPCIEEHDLSTDAFEKMIEYMYTDGLQDINPDQAEEMFDVASRYLLFPLKRAVADVLLPHLEMVSPEELCHWLILADLYGVFKFREYCLDTIACNFETFADTKEFRAMLLTFPPPSGDSSLRTTVPSMPGSDLKSDQGNLLDDLREKWLEIEAAELDERDESALQFDKRLEMLMLVAEQEKSDNSEADADGMDDLKTLGLSPDSTLISGDAERTVIS* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0042 598 MobiDBLite consensus disorder prediction 561 598 - -
Amo19g0042 598 CDD BTB_POZ_ZBTB_KLHL-like 334 425 - -
Amo19g0042 598 SMART BTB_4 163 260 IPR000210 GO:0005515
Amo19g0042 598 SMART BTB_4 335 442 IPR000210 GO:0005515
Amo19g0042 598 ProSiteProfiles BTB domain profile. 163 230 IPR000210 GO:0005515
Amo19g0042 598 CDD BACK 446 489 - -
Amo19g0042 598 SUPERFAMILY POZ domain 329 441 IPR011333 -
Amo19g0042 598 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 7 558 IPR044515 -
Amo19g0042 598 Gene3D - 2 142 IPR036770 -
Amo19g0042 598 SUPERFAMILY Ankyrin repeat 30 108 IPR036770 -
Amo19g0042 598 ProSiteProfiles Ankyrin repeat profile. 32 56 IPR002110 GO:0005515
Amo19g0042 598 ProSiteProfiles BTB domain profile. 335 411 IPR000210 GO:0005515
Amo19g0042 598 Gene3D Potassium Channel Kv1.1; Chain A 323 474 IPR011333 -
Amo19g0042 598 Gene3D Potassium Channel Kv1.1; Chain A 156 278 IPR011333 -
Amo19g0042 598 SUPERFAMILY POZ domain 161 255 IPR011333 -
Amo19g0042 598 Pfam Ankyrin repeats (many copies) 31 78 IPR002110 GO:0005515
Amo19g0042 598 Pfam BTB/POZ domain 332 438 IPR000210 GO:0005515
Amo19g0042 598 Pfam BTB/POZ domain 163 259 IPR000210 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo19g0042 BTB 3.5e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0042 K10520 - qsu:111999987 903.279