Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0034 ATGATGGCGTTCTTCAGTGGAGCTCAGCGATTTCTTTGGCAGTCTTCTTCAGTTGTGGCCTCCCACTTCACCCCTACTCGTTTCACTTCGACTCTTACTTCCCCAAAACTCTTCATCAGCGGTCTTTCAAGACTGACAACAGATGAAAAACTTACTGAAGCGTTTTCTCCTTTCGGGCAGCTGCTTGAAGCAAAGGTTATAARWGATAGAGCCTCTGGACGGTCAAAGGGATSRGGATTTGTAACTTATGCYACCYTAGAAGATGCTGAAAAGGCGAGAGCCGGAATGAATGCTAAATTTATTGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCCAGACCTCCTCAGCAGCCACAGTCTCAGCCCTCTGGAGCTGGTTTCACGGTTAACAAGACAATTGGATGGTGTGGTTGA 426 0.4601 MMAFFSGAQRFLWQSSSVVASHFTPTRFTSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVIXDRASGRSKGXGFVTYATLEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPPQQPQSQPSGAGFTVNKTIGWCG* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0034 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Amo19g0034 141 MobiDBLite consensus disorder prediction 111 141 - -
Amo19g0034 141 PANTHER NUCLEOLAR PROTEIN 8 2 141 - -
Amo19g0034 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
Amo19g0034 141 Gene3D - 26 135 IPR012677 -
Amo19g0034 141 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 141 - -
Amo19g0034 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Amo19g0034 141 SUPERFAMILY RNA-binding domain, RBD 34 135 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0034 Amo-Chr19 404652 407818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0034 34 117 Eukaryotic Initiation Factors Gene Family AT4G34110 40.476 1.02e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0034 - - gmx:100306326 189.889