Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0033 ATGACTTCGTTCCTGAAGCCTGAGAATGCCCTCAAAAGGGCTGAAGAATTGATCAATGTTGGGCAGAAGCAGGATGCTCTGCAGACACTGCACGATCTTATTACCTCGAAAAGGTACAGGGCATGGCAGAAGACCCTCGAAAGGATTATGTTCAAGTATGTGGAACTCTGTGTAGACATGCGTAAGGGACGGTTTGCAAAGGACGGGCTCATTCAGTACCGTATCATATGCCAGCAAGTGAATGTTAGCTCCCTGGAGGAGGTTATCAAGCACTTCATGCACCTATCCACTGAAAAAGCTGAACAAGCCCGTAGCCAGGCACAGGCATTGGAAGAAGCTCTTGATGTTGATGATTTAGAGGCTGATAAAAGGCCAGAGGACTTGATGCTGAGCTATGTCAGTGGGGAGAAAGGAAAGGACAGATCTGATCGGGAGCTTGTTACCCCTTGGTTTAAATTTCTTTGGGAAACATATAGGACTGTGCTTGAAATATTGCGCAACAACTCAAAGCTAGAAACTTTATATGCTATGACTGCTCATCGGGCTTTTCAGTTTTGTAAGCAATATAAGCGAACCACAGAGTTCCGCAGACTATGCGAAATCATAAGAAACCATTTGGCCAATCTTAACAAGTATCGTGATCAACGTGACAGACCAGATCTTTCAGCTCCTGAGAGCTTGCAACTGTATCTGGATACAAGATTTGAGCAGCTGAAAATTGCAACAGAACTCGAACTTTGGCAGGAAGCTTTTAGATCTGTTGAAGATATACACGGACTGATGTGCTTGGTCAAGAAGACGCCGAAGCCATCTTTGATGGTCGTTTACTATGCTAAGTTGACAGAAATATTTTGGATAGGCTCAAGTCATCTATATCATGCATATGCATGGTTCAGGCTATTTTTATTGCAAAAGAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCTTCATCAGTTGTTCTGGCTGCACTTTCGGTGCCTCCTCATGATCGCACTCATGGAGCATCTCATTTGGAACTAGAACATGAAAAGGAGAGAAATTTGAGGATGTCTAATCTTATTGGGTTTAATATGGAAACTAAACCTGAAAGCAGAGAAATGCTCTCAAGATCATCACTTCTTGCTGAACTGGCGTCCAAGGGCGTGATGTCTTGTGTAACCCAGGAAGTGAAGGATATTTACAACATTTTTGAACATGAATTCCTTCCTTCAGATCTTGCAGTAAAAGTGCAGCCCTTGTTGGCTAAAATATCAAAGTTAGGTGGTAAGCTTTCCACTGCTTCATCTGTCCCAGAAGTGCAGCTGTCTCAATACGTCCCTGCACTAGAAAAGTTAGCTACCTTGAGGTTGCTCCAGCAGGTGTCTAATGTGTACCAGAGTATGAAGATTGAGACCTTATCTGGCATGATCCCATTTTTTGATTTTTCTGTTGTGGAGAAGATTTCTGTTGATGCTGTTAAACAGAAGTTTCTTTCAATGAAAGTTGACCACATGAGAAATGTTGTAATTTTCTGCAAAATGAGTCTTGAGTCTGATGGCTTACGGGACCACTTGGCAAATTTTGCTGAGCATTTGAATAAGGCTAGACAGATGATTTATCCTGCTGAAAAAAAACCTTCGAAAATTGGAGCTTTGCTTCCAACTTTGTCCGAGGTTGTTGCCAAGGAACATAAACGACTTCTAGCTCGAAAATCTATTATTGAGAAGAGGAAAGAAGAACAAGAGCGGCAGCTTCTGGAAATGGAGCGTGAGGAAGAATCAAAGAGGTTAAGAGTGCAGAAAATGAACGAAGAGGCTGAAAAATTGAGAGTTGCAACTGAATTTGAGCAGAGGAAAAATGAGAGGCTCCGCCAAGAGATAGAGGAAAGAGAAAAGGAAGAAGCTAAAGCTTTGTTTGAGGAAGCTGAGAAAAAATTTAAAAACATTAAGGGGAAAAAGCCACTTATTGAGGGGGATAAAATTACCAAGCAAGCCTTGATGGAATTGACGTTGAATGAACAACTCCGAGAAAGACAGGAAATGGAGAAAAAACTCCAAAAACTGGCAAAAACCATGGATTATTTGGAAAGGGCAAAAAGGGAAGAGGCTGCTCCCTTGATTCATGCTGCATATGTAAAGCGCCAAGAGGAAGAGAAGATTCTTCATGAGCATGAACAGCAGCAAGAGATTGAATTGAGTAGACAACGTCATGAAGGAGATCTCAAGGAGAAGGAGAGGCTTGCCAGAATGATTGGCAATAAAGAGATATATCAAGAGAAAGTTGTTAGTCGACGCCAGGCTGAATTTGACAGATTGAGGAAGGAAACGGAGGAACGGATCTCTAGGATATTACAGTCCAGGAAACAGGACCGGGAAAGATTGAGGAAGTGGAAGTATTATCTGAATGTGGAAGAAGAGAGGCAGCAAAAGTTGCGCGAGGAGGAAGAAGCAAGGAAGCGCGAAGAGGCTGAGAGGCGAAGGAAGGAAGAGGCTGAACGATTAGCAAAATTGGAAGAGATAGCAGAGAAACAGAGACAAAGAGAGCGGGAACTGGAAGAAAAGGAAAGACAAAGAAGAGAGGCATTGTTGGGAAGAGGTGCCGAGCCAGCTTCAAGGCCTACTGAGACTCCTGCACGCCCACTTGAGTCTGGATCTGCTGCTCCTGCTGCAGCTGCCGCTGCTGCTGCACCAGCCCCAGGGAAGTATGTCCCTAGGTTCCGCCGTGAGAAACCTGAGGGTGCAGCTGCTCCTCCTGAAACAGACCGCTGGAGTAACAGTAGCAGCCGGCCGGATGGTGACAGGTGGGGTCGTGGTGAAGATCGCAGATCAGCATTTGGTTCTGGTGTGGGTTCCAGGTCATCTTCAACCTGGTCATCCTCGAGGAACCCTCGTTAA 2886 0.4421 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLETLYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYAKLTEIFWIGSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMSNLIGFNMETKPESREMLSRSSLLAELASKGVMSCVTQEVKDIYNIFEHEFLPSDLAVKVQPLLAKISKLGGKLSTASSVPEVQLSQYVPALEKLATLRLLQQVSNVYQSMKIETLSGMIPFFDFSVVEKISVDAVKQKFLSMKVDHMRNVVIFCKMSLESDGLRDHLANFAEHLNKARQMIYPAEKKPSKIGALLPTLSEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRVQKMNEEAEKLRVATEFEQRKNERLRQEIEEREKEEAKALFEEAEKKFKNIKGKKPLIEGDKITKQALMELTLNEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIHAAYVKRQEEEKILHEHEQQQEIELSRQRHEGDLKEKERLARMIGNKEIYQEKVVSRRQAEFDRLRKETEERISRILQSRKQDRERLRKWKYYLNVEEERQQKLREEEEARKREEAERRRKEEAERLAKLEEIAEKQRQRERELEEKERQRREALLGRGAEPASRPTETPARPLESGSAAPAAAAAAAAPAPGKYVPRFRREKPEGAAAPPETDRWSNSSSRPDGDRWGRGEDRRSAFGSGVGSRSSSTWSSSRNPR* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0033 961 MobiDBLite consensus disorder prediction 923 938 - -
Amo19g0033 961 Gene3D UVR domain 217 268 - -
Amo19g0033 961 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 909 IPR027512 GO:0005852
Amo19g0033 961 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 909 - -
Amo19g0033 961 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Amo19g0033 961 MobiDBLite consensus disorder prediction 803 961 - -
Amo19g0033 961 Coils Coil 797 857 - -
Amo19g0033 961 MobiDBLite consensus disorder prediction 944 961 - -
Amo19g0033 961 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 939 IPR027512 GO:0005852
Amo19g0033 961 Pfam PCI domain 373 508 IPR000717 -
Amo19g0033 961 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Amo19g0033 961 Gene3D - 351 495 - -
Amo19g0033 961 Gene3D - 269 342 - -
Amo19g0033 961 SMART PINT_4 441 532 IPR000717 -
Amo19g0033 961 Coils Coil 661 698 - -
Amo19g0033 961 Coils Coil 93 120 - -
Amo19g0033 961 Coils Coil 561 649 - -
Amo19g0033 961 MobiDBLite consensus disorder prediction 803 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0033 Amo-Chr19 395309 401955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0033 1 945 Eukaryotic Initiation Factors Gene Family AT4G11420 69.574 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0033 K03254 - gmx:100803796 1416.75