Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0026 ATGAACATGTCACTTCTTCTTCTTATTGCGACACTCTTGATGGCTACAGTTAAAGTTGCAGTTACATCTTCTTCTGATGCTGTTACGCTGCTTATGAGATTCAAGGACTCCCATGTCTCCTCTGATTCAAACAACTTCCTGGCTGACTGGTCCTCCTCCTCCAAGCCCTGCACGTGGAGGGGCATCACGTGCTCCTCCCAAGGTGAAGTCACATCCATCAACCTCACCGGAGCAGGCCTTGCTGGCACCCTTGACCTCCCAACTCTCACGGCTTTGCCTTCTCTGCACCACCTTGTGTTGCGTGGCAACTACTTCTCCTTAGGGAATCTCTCTGTCTCTTCCTTCTGTGCTCTGCAGACGCTTGATCTTTCCTCCAACAACTTCTCTGGAAACTTCCCCTTCCACCAACTTCTTCCATGTCGAGCTCTCACCTATCTCAACTTGTCAAGGAATCTGATTACTGGCGCCACGGCCACCCCTTTTGGCTTCGCTGCTTCTCTGCTTCAGCTTGACTTGTCWAGGAACCAGGTTTCCCAGCCTGAGATTTTGRCTTACACTCTCTCCAATTGTCAGGCTTTGACTCTGCTTAATTTGTCTGACAACCGAATCTCTGCTCAACTCAGTGAAACTAGTCTTGCTGCTTCTTGTGCCAACCTCACTACTCTWGACCTCTCCCATAATCAGCTCTCCGGGGAGTTGCCGCMGAGTTTCGTGGGGGATTCTTTGGAGCTTTTGGATCTCTCTGGCAACAACTTTTCAGGGATGTTCTCCAGGTTTGGGTTTGGGAGCTGCAGGAACCTTGTTAGGTTGAGTTTATCTCACAATGTGGTCTCTGGTGGAGAGTTTCCAAGCAGCCTGAGGAATTGCCAGGCTCTGGAGACTCTGGATCTTTCTCACAATGACCTTGGACCAAACATTCCTGGGGCTCTTCTTGCAGGTCTCAAGAGCTTGAAGGAACTCTTTTTGGGGAGAAATAACTTGAGAGGGGAGATTCCTGCTGAGCTTGGAATGGCTTGTGATTCTCTTGTGGTTCTTGATCTCTCTGATAATAAGCTTTCCGGTGAGTTGCCTTTGACTTTTGGGGACTGTTCTTCTCTGCAGAGTCTTAACCTTGCTAAGAATTATCTCCATGGAGATTTCCTCACTTCAGTTGTAAGCAAACTTTCAAGTCTTAGGTACCTTTATGTGGCATTCAATAACATCACAGGGCCTGTTCCTCTCTCTCTTGCCAATTGCACACAGCTTCAGGTTCTTGACCTCAGTTCCAATGGCTTCACCGGCACCATCCCCTCTGGCTTTTGCTCTTCTTCCTCGCCTCTCWAAAAGATGCTTCTTGCTGACAATTACCTGGAAGGGRKGGTGCCTGCGGAGCTTGGTGGCTGCAAGAGTTTGAGGACAATTGATTTCAGCTTCAACAATTTGAATGGCCCTATACCCTCTCGAGTTTGGTCCCTTCCCAATCTTTCAGACTTGATTATGTGGGCTAACAACCTTACAGGAGAGATTCATGAAGGCATATGCAGCAATGGAGGAAACCTTGAGACCTTGATTCTTAACAACAATTTGATATCAGGCTCCATTCCAAGCTCAATTTCCAATTGCACCAACATGGTTTGGGTCTCACTGGCAAGCAACCGCATTACCGGTGAAATACCTGCCGGAATTGGGAATCTAAAGAAACTTGCCATCCTCCAATTAGGCAACAATTCACTTGCTGGAGGGATCCCACCGGAGCTTGGGAAATGTGAAAGCCTCATATGGTTAGATTTGAATAGTAACAACCTCACTGGTACTATCCCCTCTGATCTTGCCAATCAAGCTGGCTTGGTTATGCCMGGAACTGTTTCTGGGAAGCAGTTTGCATTTGTGAGAAATGAAGGTGGGACAAGCTGCAGGGGAGCCGGAGGTTTGGTCGAATTCGAAGATATCAAGGCSGCAAGGCTTGAGAGTTTTCCTATGGTGCATTCCTGTCCATTAACTCGAATATACTCWGGCGTCACGGTTTATACATTTTCCAAGAATGGCAGCATGATCTACCTTGATCTTTCCTACAATTTCTTGTCTGGAAGCATTCCTGCAAGCTTAGGCGCAATGTCCTATTTACAGGTCCTGAATCTGGGACACAATAAGCTGATTGGGAACATTCCAGAGAGCTTTGGTGGTCTAAAAGCAATAGGAGTGCTTGATCTCTCCCATAATAACCTTCAAGGACTCATCCCTGCTTCATTAGGAGCTCTATCTTTTCTGAGTGAYCTTGATGTCTCCAATAATAACCTCACAGGCACCATTCCCACCGGTGGTCAGCTAACAACTTTCCCTTCTTCTAGATACGAAAACAACTCTAATCTTTGTGGTGTTCCTTTGCCMCCTTGCCACGGMGCTTTGAATCGGAATCATGCAGCAGGTTTCCATGCTTGGAAGAAGAAGCAACCTATTGTGACCGGGATTGTGATTGGCCTTGTTTTCTTTGTGTTGTTTTTTGTTGCCTTTGTTCTTGCTTTGTATCAAGTGAAGAAGTACCATTGGAAGGAGGAACAGAGAGAAAAGTACATAGAAAGTCTTCCAACTTCAGGTAGCAGCAGTTGGAAACTATCAAGCATTCCTGAGCCTCTCAGCATCAATGTTGCCACCTTTGAGAAACCACTGCGAAAGTTGACATTCGCGCATCTTCTCGAGGCTACTAACGGTTTCAGTGCCGAAACCTTGATAGGGTCTGGTGGTTTTGGTGAAGTCTACAAGGCTAAGCTGAAAGATGGTTGTGTTGTTGCTATCAAGAAGCTTATTCATGTAACAGGCCAGGGAGACAGAGAGTTCATGGCTGAAATGGAAACCATTGGAAAGATTAAGCACAGAAACCTTGTTCCAYTGCTWGGTTACTGTAAAATTGGAGAGGAGAGGCTTCTTGTGTATGAGTACATGAAATGGGGAAGTCTAGAGGCTGTTCTTCATGATCGTGCCAGATCGAAGCTTGATTGGGGAGCAAGAAAGAAGATTGCCATAGGGTCAGCAAGAGGACTTGCATTTCTACACCATAGTTGTATTCCTCATATTATACACCGWGACATGAAGTCCAGCAACATTCTTCTTGATGAAAATTTTGAGGCTAGAGTTTCAGATTTTGGCATGGCAAGATTGGTTAATGCCCTGGACACTCATCTCAGTGTKAGCACACTTGCTGGAACACCAGGTTATGTACCTCCTGAGTACTATCAGAGTTTTAGGTGCACAACAAAGGGTGATGTCTATAGTTATGGTGTCATACTTCTAGAGCTTTTATCCGGGAAGAGGCCGATCGACTCGTCGGAGTTTGGCGATGACAACAATCTGGTTGGATGGTGTAAGCAACTTCACAAAGAGAAAAGAAGTAGTGAAATTCTAGATCCTCACTTAATCAAGCAAGCATCCAGTGAAGGTGAACTCTACCAGTGTTTGAGAATTGCCTTTGAGTGTTTAGATGAGAGACCGTATAGGAGACCAACTATGATTCAAGTCATGGCAATGTTTAAGGAGATTCAAGCTGATACAGATAATGATGTCCTTGATGCCTTCTCTATGAAATGCAATGTCATTAAGGAATCATAA 3582 0.4553 MNMSLLLLIATLLMATVKVAVTSSSDAVTLLMRFKDSHVSSDSNNFLADWSSSSKPCTWRGITCSSQGEVTSINLTGAGLAGTLDLPTLTALPSLHHLVLRGNYFSLGNLSVSSFCALQTLDLSSNNFSGNFPFHQLLPCRALTYLNLSRNLITGATATPFGFAASLLQLDLSRNQVSQPEILXYTLSNCQALTLLNLSDNRISAQLSETSLAASCANLTTLDLSHNQLSGELPXSFVGDSLELLDLSGNNFSGMFSRFGFGSCRNLVRLSLSHNVVSGGEFPSSLRNCQALETLDLSHNDLGPNIPGALLAGLKSLKELFLGRNNLRGEIPAELGMACDSLVVLDLSDNKLSGELPLTFGDCSSLQSLNLAKNYLHGDFLTSVVSKLSSLRYLYVAFNNITGPVPLSLANCTQLQVLDLSSNGFTGTIPSGFCSSSSPLXKMLLADNYLEGXVPAELGGCKSLRTIDFSFNNLNGPIPSRVWSLPNLSDLIMWANNLTGEIHEGICSNGGNLETLILNNNLISGSIPSSISNCTNMVWVSLASNRITGEIPAGIGNLKKLAILQLGNNSLAGGIPPELGKCESLIWLDLNSNNLTGTIPSDLANQAGLVMPGTVSGKQFAFVRNEGGTSCRGAGGLVEFEDIKAARLESFPMVHSCPLTRIYSGVTVYTFSKNGSMIYLDLSYNFLSGSIPASLGAMSYLQVLNLGHNKLIGNIPESFGGLKAIGVLDLSHNNLQGLIPASLGALSFLSDLDVSNNNLTGTIPTGGQLTTFPSSRYENNSNLCGVPLPPCHGALNRNHAAGFHAWKKKQPIVTGIVIGLVFFVLFFVAFVLALYQVKKYHWKEEQREKYIESLPTSGSSSWKLSSIPEPLSINVATFEKPLRKLTFAHLLEATNGFSAETLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKWGSLEAVLHDRARSKLDWGARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLSVSTLAGTPGYVPPEYYQSFRCTTKGDVYSYGVILLELLSGKRPIDSSEFGDDNNLVGWCKQLHKEKRSSEILDPHLIKQASSEGELYQCLRIAFECLDERPYRRPTMIQVMAMFKEIQADTDNDVLDAFSMKCNVIKES* 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0026 1193 Gene3D Phosphorylase Kinase; domain 1 860 972 - -
Amo19g0026 1193 PANTHER UNNAMED PRODUCT 8 1186 - -
Amo19g0026 1193 Gene3D Ribonuclease Inhibitor 19 134 IPR032675 -
Amo19g0026 1193 Gene3D - 615 672 - -
Amo19g0026 1193 ProSiteProfiles Protein kinase domain profile. 897 1180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g0026 1193 PANTHER RECEPTOR-LIKE PROTEIN KINASE BRI1-LIKE 3 8 1186 - -
Amo19g0026 1193 SUPERFAMILY L domain-like 217 603 - -
Amo19g0026 1193 Pfam Protein kinase domain 899 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g0026 1193 SUPERFAMILY L domain-like 50 307 - -
Amo19g0026 1193 SMART serkin_6 897 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g0026 1193 SMART LRR_typ_2 485 509 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 314 338 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 698 721 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 558 582 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 216 239 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 511 534 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 722 745 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 412 436 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 746 769 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 289 313 IPR003591 -
Amo19g0026 1193 SMART LRR_typ_2 388 411 IPR003591 -
Amo19g0026 1193 PRINTS Leucine-rich repeat signature 219 232 - -
Amo19g0026 1193 PRINTS Leucine-rich repeat signature 722 735 - -
Amo19g0026 1193 Gene3D Transferase(Phosphotransferase) domain 1 973 1189 - -
Amo19g0026 1193 SUPERFAMILY L domain-like 491 791 - -
Amo19g0026 1193 SUPERFAMILY Protein kinase-like (PK-like) 878 1168 IPR011009 -
Amo19g0026 1193 Pfam Leucine Rich repeat 289 304 IPR001611 GO:0005515
Amo19g0026 1193 Pfam Leucine Rich repeat 215 232 IPR001611 GO:0005515
Amo19g0026 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1017 1029 IPR008271 GO:0004672|GO:0006468
Amo19g0026 1193 Pfam Leucine rich repeat 142 203 IPR001611 GO:0005515
Amo19g0026 1193 Pfam Leucine rich repeat 341 401 IPR001611 GO:0005515
Amo19g0026 1193 Pfam Leucine rich repeat 700 759 IPR001611 GO:0005515
Amo19g0026 1193 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Amo19g0026 1193 Gene3D Ribonuclease Inhibitor 163 791 IPR032675 -
Amo19g0026 1193 Pfam Brassinosteroid receptor island domain 608 672 IPR045381 -
Amo19g0026 1193 ProSitePatterns Protein kinases ATP-binding region signature. 903 926 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0026 Amo-Chr19 275502 279540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0026 18 1186 Receptor kinase-like Gene Family AT1G55610 64.636 0.0 1515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Amo19g0026 Pkinase 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0026 - - gmx:100779072 1649.41