Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0018 ATGGCAAAGGGTTTGCATCTTTCTCTCTGGCTTGTTCTTGTCTCTGTCATTTCAGTCACATTCAGAGCGGAGAATGTGAGCGCAAGCCCTTCGAATTTCATAAAATCGTCTTGCAGTACGACGACGTTTCCAAACGTGTGTGTGGAGTCTCTGTCCGTGTATGCAAACACGATCCAGCAAGACCCTCACGAGCTGGTCCAAACTGCCCTCACACTCAGCCTGAACAGGAGCCAGTCCACAAGGGCATTTGTGACAAAGTGCAACAAGTTCAGAGGCCTGAAGCCCAGAGAGTACGCGGCCCTCAAGGACTGCGCAGAGGAGATCAGCGACAGCTGTGACAGGCTGAGCAAGTCGCTGAAGGAGCTGAAGCTGTGCAAGGTGAAGGGTGACGATTTCAGATGGCACATCAGCAATGTTGAGACCTGGGTCTCTTCTGCTTTGACTGATGACAGCACCTGCGGTGATGGCTTTGCTGGCAACGCTCTCAATGGCAAGATGAAGGATTCCATCAGGGCTAGAATGGTAAATCTTGCTCAGGTCACTAGCAATGCCTTGCTGTTATTGCTGGTATCTTCACTTGTCTTATCGGCATCAAGAAGAGTTCCTTCTTCTTCTTCTTCTTCTTCTCATTCTTCTGGTAACATTGATTGGTGGTGCAACCTAACGCCACACCCTGGAACATGCAAGTACTACTTAGGTCAAAGCAACCAACAGCACACAACAATAATGAAGCACAAAACCGAGTTGAGGAGGATGCTTGTGAAATCTGCATTAGAGGAAGCAACCATGATGCAAAAGGAAGCACATGGTTTGGACCAAAACTTGATCAAGACAAAGAACCATGAAGCTGTGCATGGCGATTGCTTGAAGCTCTACGACGACACCATCTTCCATCTCAAGCGTACCCTCGAATGCCTTAACAACAACAACTGTTCAGCAGTTGATGCACAAACATGGCTCAGCACTGCTCTCACAAACATCCAAACGTGTCAAACGGGTGCACAAGAACTCAGCGTTCAAGATTTCAAGGTTCCATCTAAGAACACCAATGTCACTGAGATGGTGAGGAATAGCTTAGCCATCAACTTGGATTTCGCTCACGTTGTGGTGGCGAAAGACGGATCGGGGAATTTCAAGACGGTGCAAGAAGCGCTGAACGCGGCGGCGAAGAGAACCGTGAAGACAAGCAGATTTGTAATATACGTGACAAAAGGAGTATACAAAGAAAACATAGAGGTGGAGAAAAACAACGATAACGTGATGCTGTTTGGTGACGGCATGAGAAACACCATCATTACCGGCAGCAGAAGCTCTCAAGACGGTTACACAACATACAGCTCCGCAACCGCCGGCATAGATGGGCTTCACTTCATCGCAAGAGACATCACTTTCCAAAACACCGCGGGCCCACGCAAGGGCCAAGCTGTGGCCCTGAGATCCGCCTCCGACCTCTCTGTGTTCTACAAGTGCGGCATTGTGGGCTACCAAGACACGCTCATGGCCCACGCGCAGCGCCAGTTCTACAGACAGTGCTACATCTACGGCACCGTTGACTTCATCTTCGGCAACGCCGCCGTGGTCTTCCAAAACTGTCACATATTTGCAAGAAAGCCCCTGGATGGGCAGGCCAACACCATCACCGCACAGGGCCGAGGGGATCCCTTCCAGAACACCGGCATCTCCATCCACAAATCAGTTATCAAAGCCGCACCGGATCTCGTTCCTGTTTTGGACAAGGTTCAGACCTTCTTGGGCCGGCCCTGGCAGCAGAACGCTAGGGTTGTTGTTATGAGGACTTACTTGGACTCTCTTATAAGCCCATTGGGCTGGGATGAATGGAATGGATCTGACTTTGCCAAGGATACTTTATATTTTGGAGAGTATGAGAATTCTGGGCCTGCTTCCGATACAAGCAAAAGAGTGAAGTGGCCCGGTTTTCATGTGATATCAAACCCAAAAGAGGCTTCACAATTCACTGTGACTTCTCTTCTTGCTGGTCGCACCTGGTTGCCTACCACATCTGTTCCCTTCAGCTCTGGCCTCTGA 2046 0.4971 MAKGLHLSLWLVLVSVISVTFRAENVSASPSNFIKSSCSTTTFPNVCVESLSVYANTIQQDPHELVQTALTLSLNRSQSTRAFVTKCNKFRGLKPREYAALKDCAEEISDSCDRLSKSLKELKLCKVKGDDFRWHISNVETWVSSALTDDSTCGDGFAGNALNGKMKDSIRARMVNLAQVTSNALLLLLVSSLVLSASRRVPSSSSSSSHSSGNIDWWCNLTPHPGTCKYYLGQSNQQHTTIMKHKTELRRMLVKSALEEATMMQKEAHGLDQNLIKTKNHEAVHGDCLKLYDDTIFHLKRTLECLNNNNCSAVDAQTWLSTALTNIQTCQTGAQELSVQDFKVPSKNTNVTEMVRNSLAINLDFAHVVVAKDGSGNFKTVQEALNAAAKRTVKTSRFVIYVTKGVYKENIEVEKNNDNVMLFGDGMRNTIITGSRSSQDGYTTYSSATAGIDGLHFIARDITFQNTAGPRKGQAVALRSASDLSVFYKCGIVGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCHIFARKPLDGQANTITAQGRGDPFQNTGISIHKSVIKAAPDLVPVLDKVQTFLGRPWQQNARVVVMRTYLDSLISPLGWDEWNGSDFAKDTLYFGEYENSGPASDTSKRVKWPGFHVISNPKEASQFTVTSLLAGRTWLPTTSVPFSSGL* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0018 681 Pfam Pectinesterase 367 666 IPR000070 GO:0030599|GO:0042545
Amo19g0018 681 PANTHER PECTINESTERASE 184 365 - -
Amo19g0018 681 PANTHER PECTINESTERASE 366 680 - -
Amo19g0018 681 TIGRFAM PME_inhib: pectinesterase inhibitor domain 186 362 IPR006501 GO:0004857
Amo19g0018 681 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 188 IPR006501 GO:0004857
Amo19g0018 681 SMART PMEI_2 210 361 IPR006501 GO:0004857
Amo19g0018 681 SMART PMEI_2 29 187 IPR006501 GO:0004857
Amo19g0018 681 CDD PMEI-like_3 217 362 - -
Amo19g0018 681 Pfam Plant invertase/pectin methylesterase inhibitor 32 185 IPR006501 GO:0004857
Amo19g0018 681 Pfam Plant invertase/pectin methylesterase inhibitor 215 361 IPR006501 GO:0004857
Amo19g0018 681 Gene3D - 365 681 IPR012334 -
Amo19g0018 681 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 190 IPR035513 -
Amo19g0018 681 Gene3D Invertase/pectin methylesterase inhibitor family protein 210 364 IPR035513 -
Amo19g0018 681 CDD PMEI-like_3 36 183 - -
Amo19g0018 681 ProSitePatterns Pectinesterase signature 2. 513 522 IPR033131 -
Amo19g0018 681 PANTHER PECTINESTERASE 366 680 - -
Amo19g0018 681 PANTHER PECTINESTERASE 184 365 - -
Amo19g0018 681 SUPERFAMILY Pectin lyase-like 367 680 IPR011050 -
Amo19g0018 681 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 213 362 IPR035513 -
Amo19g0018 681 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 187 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0018 Amo-Chr19 203046 224431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0018 218 681 Carbohydrate Esterase AT5G51490 54.257 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0018 K01051 - gmx:100806133 714.531