Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0013 ATGGAAGACTACTCAGAGGAAGATTATGAGTTCCTGAACCTTAGCCTTTCAGTTACTACTCCTTCTTCTAGGGAAACCAACATGATCATGAAGAAAAAGAAGAAGAACTATGAAGCCAAGATCTTGAGGCTCCTCCAAGTCAGGGAAAACATGCTAAGACAAGATCACCATAACCACCATCACCACCTCCAAAGAAGAAAACCAGGCACCAACAACAACAACAATCTCATCCACTTGCTCCTCACAACGGCCACCGCCATTGACGAAGACAGCAACAACATTGCTGCATCTCTTGACAATCTCACAGATCTGTACCAAACAGTTTCCCTAACAGGTGATTCAGTTGAGCGTGTCGTGGCGTATTTCGCCGATGGCCTCGCCGCCAGGCTCCTCACAAAGAAATCTCCATTCTATGACATGCTCATGGAGGAGCCAACATGTGAAGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCAATCTTAGAAGCCTTTGAAGAAGAAGAAGACAGGAACAACCGTTCAATCCATGTCATTGACTTTGACAAAGCTTCAAGCGGAAACCGCATATCTCTAAGGATCACCGGATTCGGCACCACTCTGAAGGAGCTTCAAGAAACGGARTCCAGATTGGTGAGCTTCTCCAAAGGCTTCGGTAACCTTGTGTTYGAGTTTCAAGGGTTGTTGAGAGGGTCCAGGATCACGAATCTGAGGAAGAAGAAGAACGAGAGTGTTGCAGTGAACCTTGTTTCATACCTCAACAGTGCGAGYAACAGCAGTTTGTTGATGAATTTCTCTGACACATTGGGATTCGTSCGGTCTCTCAGGCCTTCGGTTGTGGTGCTGGTGAAGCAAGAAGGTAGCAGRAGCATTAGAACGTTCTTGTCTCGGTTCACAGAGTCATTGCATTACTTTGCCGCCATGTTTGATTCCCTTGATGATTGTCTTCCGCTCGAGAGCGCAGAGAGGTTGAGGATTGAGAAGAAGCTTCTCGGGAAAGAGATCAAGAGCATGCTCAACTGTGACATGGACATGGACGGCGTGGATTGTCCCAAGTATGAGAGGATGGAAGCGTGGAAAGCCAGAATGGAGAATCATGGTTTTGTTGCCATGAAGATGAGCTCCAAATCTCTCATGCAAGCTAAGCTTCTTCTCAAGATGAGGACTCATTATTACTATTCTCCACCACTTCAATTTGATGATGATGCCGCCGCCGCCGCCGGCGGTGGTTTCAGGATTTCTGAAAGGGACCAGGGTAGAGCCATTTCTTTGGGGTGGCAGAATAGGTTTCTTCTCACTGTGTCCGCATGGCAATTACCACTTTCATCATCATAA 1377 0.4633 MEDYSEEDYEFLNLSLSVTTPSSRETNMIMKKKKKNYEAKILRLLQVRENMLRQDHHNHHHHLQRRKPGTNNNNNLIHLLLTTATAIDEDSNNIAASLDNLTDLYQTVSLTGDSVERVVAYFADGLAARLLTKKSPFYDMLMEEPTCEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEEEEDRNNRSIHVIDFDKASSGNRISLRITGFGTTLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRITNLRKKKNESVAVNLVSYLNSASNSSLLMNFSDTLGFVRSLRPSVVVLVKQEGSRSIRTFLSRFTESLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNCDMDMDGVDCPKYERMEAWKARMENHGFVAMKMSSKSLMQAKLLLKMRTHYYYSPPLQFDDDAAAAAGGGFRISERDQGRAISLGWQNRFLLTVSAWQLPLSSS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0013 458 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 452 IPR005202 -
Amo19g0013 458 Coils Coil 34 54 - -
Amo19g0013 458 PANTHER OSJNBA0084A10.13 PROTEIN 19 452 - -
Amo19g0013 458 ProSiteProfiles GRAS family profile. 67 452 IPR005202 -
Amo19g0013 458 Pfam GRAS domain family 76 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0013 Amo-Chr19 133796 135220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0013 79 452 GRAS Transcription Factor Family AT2G04890 30.886 7.28e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo19g0013 GRAS 1e-71 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0013 - - gmx:100813979 593.193