Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0012 ATGGATAGGAAAGAAAGCCTTTGTACTAACACCTGGACAGAGCTGTCTTCCTTAACTAATTGTGGAAATGGATTGCAGATAAACTTGTCCCCTGATCCTTCAATTTCAGATTATGGGAAAAGGGTAGAAGCACCTTTCAAAGATTTTAACCAACCCTCTCAAATGCAGTCTCTACTTTCCAAGAATGTCATTAAGATTGCTGATCAAGAAAACTGTCCACCAAGTGACTCATCTCAAACCAGTATACTCCAAAATTGGGATGCCAGTGTGATGTTAAATAATCTTTCCTTCTTGGAAAAAAAGGTTCATCAACTTCAGGAGTTAGTGTGCTTGATTGTTAGTAAAAAGGGCCAAACTTTCGGACAGCCTAATGAACTGTTAACTCAGGAACAACAGCTCATTACTGCTGATCTTACATCAATTATTGTTCAGTTGATCTCTTCTGCAGGTAGTCTTCTCCCTTCTGCCAGACATACCCTTACAAATACCAGTCCATTGGTTCAACAGCTTTGCCAGCTTCAGGGGATTACGGTTCCTTTTGCGTCCGGCTCAGGCCAAAGTAGTGTTCAACCACAAAATAGTGGGGCAGATAAATTATCTGAGAGCTCACTGAAGAATGATCTACCAAATAATTGTGATCTGGAGCAAAAGTACAATGTGGAAGAACATGAATTGAGGGATGAGGAAGATGCTGATGATGGAGAGAACCTCCTGCCTGGTTCCTATGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCCCCACATACACATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGAGATGCAAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACCGCAGCTGCTCTTGCAAAACCTCATAAAGAATCTGAGTCACAACCTAAGCTTATCAAGAGGTATTCTTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAAAAATTTCAACCTCTGAAGACAATTTTGTGTGTCAAAAATCATTACAAAAGAACACACTGTGACAAGAATTACACTTGCAGCAGATGCCACATAAAGAAGTTTTCAGTCATGGCGGATCTTAAAACTCATGAAAAGCACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAGGACAAGCTTTTTGGACATATTGCTCTTTTCCAAGGCCATACACCAGCCATTCCCATGGAAGACAATTATAAAAGAACAACAGGCCTTCCAGACCAAGATAATAGCAAAGCAGAAGTTATGAGCTTCAGTTCTGGATTAAATCCTTCAACTGAAAATGGAGTTCAAAATGTCATGGATGTAAAAGGAAACATTGATGATCCTATTACTTGTTTCTCTCCATTGAACTTTGAAGCTAACTTTGGTGGCTTTAATGAATTCACTGAACCTCAATTTGATGATGGCTCGGAAGGTTCTTTCTCTTTTCTCATCCCTGGATCTTTCAAATCTGGAGAAKTATCAAGCTCTGATRATGTWGTTTGA 1512 0.3995 MDRKESLCTNTWTELSSLTNCGNGLQINLSPDPSISDYGKRVEAPFKDFNQPSQMQSLLSKNVIKIADQENCPPSDSSQTSILQNWDASVMLNNLSFLEKKVHQLQELVCLIVSKKGQTFGQPNELLTQEQQLITADLTSIIVQLISSAGSLLPSARHTLTNTSPLVQQLCQLQGITVPFASGSGQSSVQPQNSGADKLSESSLKNDLPNNCDLEQKYNVEEHELRDEEDADDGENLLPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESESQPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKNYTCSRCHIKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPMEDNYKRTTGLPDQDNSKAEVMSFSSGLNPSTENGVQNVMDVKGNIDDPITCFSPLNFEANFGGFNEFTEPQFDDGSEGSFSFLIPGSFKSGEXSSSDXVV* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0012 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 490 IPR044300 GO:0010044|GO:0010447
Amo19g0012 503 MobiDBLite consensus disorder prediction 182 211 - -
Amo19g0012 503 Gene3D Classic Zinc Finger 242 322 - -
Amo19g0012 503 SUPERFAMILY beta-beta-alpha zinc fingers 256 284 IPR036236 -
Amo19g0012 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Amo19g0012 503 SMART c2h2final6 258 280 IPR013087 -
Amo19g0012 503 SMART c2h2final6 345 367 IPR013087 -
Amo19g0012 503 SMART c2h2final6 307 340 IPR013087 -
Amo19g0012 503 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Amo19g0012 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0012 Amo-Chr19 118739 121117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0012 225 487 C2H2 Transcription Factor Family AT1G34370 69.091 2.50e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo19g0012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0012 - - gmx:100170687 704.516