Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0002 ATGTTTGGGGAGTCATCAGGAARGTGGTTGGATTCTGAATTATGGCATGCTTGTGCTGGTTCCATGGTTCAAATGCCACCTCTGAACTCAAAAGTTTTGTACTTTCCACAAGGGCATGCAGAGCATGCTCATGGAGGAAAAGTGGATTTCAGAACGAGAATCCCTTCTTTCATTCCATGCTGGCTCTCTGGAATCAAATACATGGCAGATTCTGATACTGATGAGGTCTTTGTCAAGTTGTTTTTGACACCTCTCACTCAAGAAAACACCAATGCATTGTTAATGGATTTGGAGGATGGTGGTGATGATTGTGGTAACAACAATGGAGGAGTTGTTGAGGGGGGTCATCAAGAGAAACCTGCTTCATTTGCAAAGACACTGACACAATCTGATGCCAACAATGGTGGAGGGTTCTCAGTGCCTCGTTACTGTGCTGAAACCATATTCCCAAGGCTGGATTATTCTGCTGATCCTCCTGTTCAGAACATTGTTGCCAAAGATGTTCATGGAAATTGCTGGAAGTTTAGGCACATCTATAGAGGAACTCCTCGCAGGCACCTATTGACCACTGGATGGAGCAATTTTGTGAGCCAGAAGAAGCTTGTAGCTGGTGATTCCATTGTGTTCTTGAGAGCTAAGGATGGTGATCTGTGTGTTGGGATAAGGAGGGCCAAGAAGGTGGCAGTTGGAGGCGGCGAGGTGTCGGTGTCATCGGTGGTTGAAGCTGTGAGTTTTGGTGTTAATGGAAGGCCATTTGAGGTTGTGTACTATCCAAGAGGAAGCTCACCTGAGTTYTGTGTTAAGGCCTCAGTTGTGAGAGATGCAATGAAAGTGAGGTGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAGACTGAGGATTCTTCTAGAATCAGTTGGTTCATGGGAACCATTTCTTCTGTTCAGCTTCTTGATCCCATTCATTGGCCTAATTCTCCATGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGAATTACTACAGCATGTGAAGTGTGTAAATCCTTGGTTGGTTGAATTAGTCTCAGACATTCCCACCTACCATCTTTCTCCATTCTCTCCAACTAGAAAGAAACCAAGGTTTCTTCACAATCAAGATTTTCACCTCATCAATAACCAACTTCCAATAATGCCAGGATTTCCCAGCAATTATAGTTACAGTAATGATAATCATCTTGTTATGAATCATTCTTCTAAGTCCTTATTGATGAACATTCAAGAGAATAACAGTATTGCAGGCATACAGGGAGCCAGGCATGCTCAACTTCTTGATCTGTCTCCATCTGATTATCCTTTCTTCAACAATCTTCCATCACAATCACAATCACACAATATGAATCTTATTAGTCCCCCTTATTGTGGGACCTATAAGAACAGCAATGCTGATATATCTTGCTTGTTAAGTGTTGGAAATTCTAGCCATAATTTAAAGGAAGAACACAATGAAGAAGTGAAATCATCATCACCACCATCCCATATCTTCTTGTTTGGACAACTGATTCACACTGAACAGCATTGTTCAAACGGTGGCAGTTCTAGCTCAAATGGGAACAATTCATCTGATGAAGGGACTTTGCTGAAGATGAAATCAAATAATGCTTCTGAATTGCATCTAAATAGTAGTCCAGTAGAGAAGAACCCTTCTTCTAATGGAGGGTCTCCCTGGTACAAAGATCAGCACAAATCTGGTCTTGGAACAGAAAATGTTAATCTACTTTGCTTGGCTCTATAG 1752 0.4235 MFGESSGXWLDSELWHACAGSMVQMPPLNSKVLYFPQGHAEHAHGGKVDFRTRIPSFIPCWLSGIKYMADSDTDEVFVKLFLTPLTQENTNALLMDLEDGGDDCGNNNGGVVEGGHQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNIVAKDVHGNCWKFRHIYRGTPRRHLLTTGWSNFVSQKKLVAGDSIVFLRAKDGDLCVGIRRAKKVAVGGGEVSVSSVVEAVSFGVNGRPFEVVYYPRGSSPEFCVKASVVRDAMKVRWCSGMRFKMPFETEDSSRISWFMGTISSVQLLDPIHWPNSPWRLLQVVWDEPELLQHVKCVNPWLVELVSDIPTYHLSPFSPTRKKPRFLHNQDFHLINNQLPIMPGFPSNYSYSNDNHLVMNHSSKSLLMNIQENNSIAGIQGARHAQLLDLSPSDYPFFNNLPSQSQSHNMNLISPPYCGTYKNSNADISCLLSVGNSSHNLKEEHNEEVKSSSPPSHIFLFGQLIHTEQHCSNGGSSSSNGNNSSDEGTLLKMKSNNASELHLNSSPVEKNPSSNGGSPWYKDQHKSGLGTENVNLLCLAL* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0002 583 SMART B3_2 123 225 IPR003340 GO:0003677
Amo19g0002 583 Gene3D - 279 352 - -
Amo19g0002 583 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Amo19g0002 583 Pfam Auxin response factor 248 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo19g0002 583 PANTHER AUXIN RESPONSE FACTOR 16 6 230 - -
Amo19g0002 583 SUPERFAMILY DNA-binding pseudobarrel domain 118 224 IPR015300 -
Amo19g0002 583 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 230 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo19g0002 583 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 233 544 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo19g0002 583 MobiDBLite consensus disorder prediction 511 568 - -
Amo19g0002 583 MobiDBLite consensus disorder prediction 511 563 - -
Amo19g0002 583 Gene3D - 121 225 IPR015300 -
Amo19g0002 583 CDD B3_DNA 122 223 IPR003340 GO:0003677
Amo19g0002 583 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Amo19g0002 583 PANTHER AUXIN RESPONSE FACTOR 16 233 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0002 Amo-Chr19 66056 68966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0002 10 544 B3 DNA Binding Superfamily AT4G30080 50.333 1.10e-179 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo19g0002 B3 2.1e-21 CL0405