Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3485 TCTCCCAACAACGCCGCTGTCTCCCTCTCTCAACCCGTCACAATCCCTCCCTCCAACCCGTTGCAGCACCTCCGTCCATCCCTCCCTCATCGCTCATGCCCCGCACCGCCGTCTCCCTCTCCCACACCCGTCGCGCCACCCGTCAGCGCCACCGTCATTCCGCTACTCTCTCTTTTTCTCTCTACATGGACTCTCACTCTCCCTCCTCCGTCATCATTACCGGTGCCGGCATCTCTGGTGTTTATCCATGAATCGGCAGCAGGATCCGGAAGGAAACCATCGGTGGCGTCTCCGTCGAGCTCGGTGCCGGATGCATCGCTGGCGTCGGCGATTTTCGTGAAGACTCTAACCGGGAAGACGATAACGCTAGAGGTGGAGAGTTCTGATACTATTGATAACGTGAAGCGTCTAATCTTTGCTGGGAACCAGCTTGAGGACGGACGCACTCTGGCTGATTACAACATTCAAAAGGAGTCCACCCTCCATCTTGTTCTGAGGCTCTGTGGCGTGCTGATCAACGTGCATTAA 528 0.5663 SPNNAAVSLSQPVTIPPSNPLQHLRPSLPHRSCPAPPSPSPTPVAPPVSATVIPLLSLFLSTWTLTLPPPSSLPVPASLVFIHESAAGSGRKPSVASPSSSVPDASLASAIFVKTLTGKTITLEVESSDTIDNVKRLIFAGNQLEDGRTLADYNIQKESTLHLVLRLCGVLINVH* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3485 175 PANTHER UBIQUITIN 31 169 - -
Amo18g3485 175 MobiDBLite consensus disorder prediction 30 45 - -
Amo18g3485 175 Gene3D - 137 169 - -
Amo18g3485 175 SMART ubq_7 109 166 IPR000626 GO:0005515
Amo18g3485 175 MobiDBLite consensus disorder prediction 1 21 - -
Amo18g3485 175 Pfam Ubiquitin family 136 167 IPR000626 GO:0005515
Amo18g3485 175 PANTHER - 31 169 - -
Amo18g3485 175 PRINTS Ubiquitin signature 147 168 IPR019956 -
Amo18g3485 175 PRINTS Ubiquitin signature 126 146 IPR019956 -
Amo18g3485 175 MobiDBLite consensus disorder prediction 1 45 - -
Amo18g3485 175 Gene3D - 109 136 - -
Amo18g3485 175 ProSiteProfiles Ubiquitin domain profile. 136 170 IPR000626 GO:0005515
Amo18g3485 175 SUPERFAMILY Ubiquitin-like 110 169 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3485 Amo-Chr18 138342304 138343448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3485 111 172 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 76.316 1.26e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3485 K02927 - tua:125530324 104.76