Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3470 ATGGACCTTGATGGGGGCAACAAGCGCGTGTACCAACGATTAGGTGGACCCTCAGGGGACTCGAAGCATCAGAAAGTGTGCTATCACTGGCAAGCTGGCAAGTGCAATCGTCACCCATGCCCTTTTCTTCATAGCGAGTTGCCAACTCCCAATGTTAATGGTACCTCTTCGAAGAGGRCTCATGGTTCTGCTGACAATTCRGGATTTTCGGGACATCGCCGGAACCCTCACTTCAACAACACATGGGGTCGCGGTGGTGGTCGTGGTGGCGGTCGCGGTGCCYGTGGTGGAGTTGTTGGTGGTGACATGAGTGTAGTTAGGAAGGCTGATAAAGTTTGTAATTATTGGATTCAGGGGAATTGTAATTTTGGTGAGAGGTGTAAGTTCCTTCACTCTTGGAATACAGGGGATGGGTTTTCTATGTTGACACAGCTTGAAGGCCATCAGAAGGTTGTTAGTGGAATTGCCTTTCCTTCTGGCTCGGATAAGCTTTATACTGGAAGTACTGATGAGTCTGTAAGGGTTTGGGACTGCCAGTCTGGAAAGTGTGTAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTAGGCATACCTAATTTTGTGAAGGTCTGGAACACACAAAATTCAATGGAACTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGGATGGATCTATATTGGTATGGAAGTTCAATGTAGTTGCTAACTGCTTTGAGCCAGCTGCATCACTTAAGGGTCACACGCGTGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTCTACTCCGGTTCAATGGACAATACAATAAGAGTCTGGAATCTTGAAAATTTAGAGTGTTTACAGACATTAACAGACCACACGTCTGTCGTGATGTCTGTTCTCTGTTGGGAGCAGTTCCTTTTGTCTTGTTCGTTAGACAAAACAGTAAAGGTGTGGTATGCTACTGAAAGTGGAAACTTGGAAGTGACATATACTCACAACGAAGAGCATGGAATAGTTACTCTCTGTGGAATGCACGATGCACATGGCAAGCCCATTTTGTTGTGCTCTTGCAATGATAATACTGTGCGCRTCTATGACCTGCCATCATTTGCAGAGAGAGGCAAGATATTTACAAAYCAAGAGGTACGGGCAATTCAGGCAGGGCCTAATGGCTTATTCTTCACTGGTGATGGAACTGGTCAAGTCAAAGTGTGGAATTGGACACCGGAGCCAATACCTACCATTCAATAA 1308 0.4503 MDLDGGNKRVYQRLGGPSGDSKHQKVCYHWQAGKCNRHPCPFLHSELPTPNVNGTSSKRXHGSADNSGFSGHRRNPHFNNTWGRGGGRGGGRGAXGGVVGGDMSVVRKADKVCNYWIQGNCNFGERCKFLHSWNTGDGFSMLTQLEGHQKVVSGIAFPSGSDKLYTGSTDESVRVWDCQSGKCVAVINLGGEVGCMISEGPWVFVGIPNFVKVWNTQNSMELSLNGPVGQVYALVVNNDMLFAGTQDGSILVWKFNVVANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLENLECLQTLTDHTSVVMSVLCWEQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGIVTLCGMHDAHGKPILLCSCNDNTVRXYDLPSFAERGKIFTNQEVRAIQAGPNGLFFTGDGTGQVKVWNWTPEPIPTIQ* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3470 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 301 - -
Amo18g3470 435 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Amo18g3470 435 SMART WD40_4 388 425 IPR001680 GO:0005515
Amo18g3470 435 SMART WD40_4 261 298 IPR001680 GO:0005515
Amo18g3470 435 SMART WD40_4 342 385 IPR001680 GO:0005515
Amo18g3470 435 SMART WD40_4 301 338 IPR001680 GO:0005515
Amo18g3470 435 SMART WD40_4 138 177 IPR001680 GO:0005515
Amo18g3470 435 SMART WD40_4 217 254 IPR001680 GO:0005515
Amo18g3470 435 Gene3D - 133 261 IPR015943 GO:0005515
Amo18g3470 435 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Amo18g3470 435 Gene3D - 102 132 - -
Amo18g3470 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 177 - -
Amo18g3470 435 MobiDBLite consensus disorder prediction 48 77 - -
Amo18g3470 435 SUPERFAMILY WD40 repeat-like 139 428 IPR036322 GO:0005515
Amo18g3470 435 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 430 - -
Amo18g3470 435 PANTHER - 1 430 IPR044715 -
Amo18g3470 435 SMART c3hfinal6 109 133 IPR000571 GO:0046872
Amo18g3470 435 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Amo18g3470 435 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Amo18g3470 435 SUPERFAMILY CCCH zinc finger 108 132 IPR036855 GO:0046872
Amo18g3470 435 MobiDBLite consensus disorder prediction 48 95 - -
Amo18g3470 435 Gene3D - 7 58 - -
Amo18g3470 435 Pfam WD domain, G-beta repeat 265 298 IPR001680 GO:0005515
Amo18g3470 435 Pfam WD domain, G-beta repeat 303 337 IPR001680 GO:0005515
Amo18g3470 435 Pfam WD domain, G-beta repeat 142 177 IPR001680 GO:0005515
Amo18g3470 435 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Amo18g3470 435 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Amo18g3470 435 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Amo18g3470 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515
Amo18g3470 435 Pfam Zinc finger domain 113 131 - -
Amo18g3470 435 Gene3D - 262 433 IPR015943 GO:0005515
Amo18g3470 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 307 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3470 Amo-Chr18 137950111 137954666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3470 240 425 Miscellaneous Gene Families AT5G08390 27.273 1.25e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo18g3470 WD40 0.0049 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3470 - - gmx:100775542 734.947