Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3419 ATGGCGAATGTAATAATGGCATCAAGTAGCAAGTTTTGCAAGGATGCGTGTATGTGGAATGAGCCTCTTGCGGACAACTGGATGGAGGGCAAGGGTGGTGTGTCGAATTCTCAGGACACAATGTATGATACGAGAGTGGAGGAAGACGCTGAGTTATCCGATTGGGAAGGAAGGGGGGCTTCAATGTTGCCCGTTTTTTTGGGTTTGGATGGGTTGCAAGCAGAAGATGTGCTTGAAATGGAGTTTTCTTCACCTCAGGAGGCAAGCGGCTTCTATAACAATTACAGCCGACTAAAGCGGTTTGCATCAAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGTGGTACACGTTTGTTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGTTGTAACCCGATGCGGATGCATGGCGGAGATGAGGATAAAGKGGAAAGAGGGTAGTGGGAGGTGGTATGTGTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGGGAGATTGGGATTAGCATACCTAAGATTTATGAGTCTTTCGCAGCACAACTAGGGGGCTTTAATCTGGTAACATTCACAAAGCAAGATATGTGTGTGGATTTTCTTCGTGACACGGAGGACGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACAGAGTTTGTTGAGCTGGAAAAGTCTGGATGGACTGTGTTCACCCGCGAAATGTTTGTCAGATTCCGGGATAGCCTGAAACGTGAGAACCCTCATACATATACTCTCCAGAAGTATCGGAGGCCTGAGATGAATTGGAAGGTTTATAGGGACCATATCTCGAACAGATTTAGCTGCAGCTGCATGCGTATGGAGTCGTTTGGCATTCCTTGTGTGCATATCCTTTCCGTCTGTGTTATGCTAGACTTGGTGGAAATCCCTGAAAGCCTTGTGCTGCGTAGGTGGTCTAAGGCAGCCAAATTGGAGATACATAACCAATGTGTTGAGCAACAGACTGCTGACCCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTGTGTAAGCGTTTAGGGCGCGTTGCTTGCATGAGTGATGAAGACTTCAAGCTTTACTCAAAGAAGCTTCTGAGCGATGCTCTCTTCCTTGAAATAAAGTATGGCTTAAGACCATCAACGGATGATATCACAACAGCAAATGATTGCGGGGTGAAAGACCCCATTCGTGTCAGAACAAAAGGCACTGGTCGGATGAGCCAAGCAGGCGGTTCTGCGCCGAAAACTAAAAGAAAGGGCAGCACATGCGGGAAGCTAGGGCACCGAAGGACTAGATGCCCCAATGGAGCCGCGCAAGCTTCAACGAGGATCAATGAATCACATGGTGGAAGAAACAAACGCAAGCGATCAAAGGTACCCGTCGTTGTCCGAGATAATTGTCAGCCTGAAAATGCATGTCAAGCCGGAAGCGACAAATGGGAACACTTTTCGCTTGCAGACCCATGA 1608 0.4764 MANVIMASSSKFCKDACMWNEPLADNWMEGKGGVSNSQDTMYDTRVEEDAELSDWEGRGASMLPVFLGLDGLQAEDVLEMEFSSPQEASGFYNNYSRLKRFASRRGKTVRNTAGEIVWYTFVCNRQGFREKKWLEKVDRKREHKVVTRCGCMAEMRIKXKEGSGRWYVSRFVEEHNHELAYGKLVDYLRSHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMCVDFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWTVFTREMFVRFRDSLKRENPHTYTLQKYRRPEMNWKVYRDHISNRFSCSCMRMESFGIPCVHILSVCVMLDLVEIPESLVLRRWSKAAKLEIHNQCVEQQTADPSVTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSKKLLSDALFLEIKYGLRPSTDDITTANDCGVKDPIRVRTKGTGRMSQAGGSAPKTKRKGSTCGKLGHRRTRCPNGAAQASTRINESHGGRNKRKRSKVPVVVRDNCQPENACQAGSDKWEHFSLADP* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3419 535 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 80 302 - -
Amo18g3419 535 Pfam SWIM zinc finger 318 340 IPR007527 GO:0008270
Amo18g3419 535 Pfam FAR1 DNA-binding domain 91 180 IPR004330 -
Amo18g3419 535 ProSiteProfiles Zinc finger SWIM-type profile. 309 342 IPR007527 GO:0008270
Amo18g3419 535 SMART 26again6 317 344 IPR006564 GO:0008270
Amo18g3419 535 PANTHER OS07G0283300 PROTEIN 80 302 - -
Amo18g3419 535 MobiDBLite consensus disorder prediction 449 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3419 Amo-Chr18 136721965 136725843 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g3419 FAR1 9e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3419 - - aip:107611673 595.119