Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3400 ATGGAAGACCAGCCACCAACAAAGCCATCACCAACAACGAAGACCTACAAGCTCACTGCCACTTCAATCTCCTACACTAAATCCACCACCACCACCATCACCACCACCACCTTTGCTGTACCACTCTTACTCTTCAAACACTGCACAACAACCCCACCAACCTACATCCTCAAAGAGGTCTCCTTAACTGCATACCCTTCTGAAATCCTTGCCATTGTTGGCCCAAGTGGTGCAGGAAAATCCACCCTCTTAGACATTCTCTCTGCTAGAACACTTCCATCACATGGAACTCTTGAACTCAACAATTCCCCTCTTATTCCTTCCACATTCAGAAAACTCTCAGCATATGTTCCACAACATGATGCATGCCTCCCTTTGCTCACAGTGTCCGAGACTTTTGCATTTTCAGCACACCTCCTCAAGCCTAAAACCTCTGACATTGCAGCCATAGTTTCTTCTCTTCTCAGTGAACTGAGGTTAACTCATTTGGCMMACACAAGGCTCTCTCATGGTCTATCAGGTGGAGAACATAGAAGAATCTCCATAGGCCTTAGTCTTCTCCATGATCCTGCAGTGTTGCTCCTTGATGAACCAACTTCAGGCCTTGACAGCACCTCTGCATTCAAGGTCATGCAGATTCTCAAATCCATTTGCGTTTCACGTCACAGGACAATTGTTCTCTCCATTCACCAACCAAGCTTCAAGATCCTCTCTTGCATTGATAGGATCTTGTTGCTRTCCAAGGGTACTGTGGTCCACCACGGAAGCCTTGCATCACTYCAAGCATTCTTACACTCRAATGGCTTTACCGTGCCYCATCAACTCAATGCATTGGAATATGCAATGGAAATATTAAGTCAATTGAACGAGCTTAAGCCTATTACTCCACCAAGCATTCCTGAATCACCTGAAAGTTCATCAGCTGCAAGTTCCATATCTGATAACAATGGACATAGATCCAAAGAGATAATAAGGTACAAGAGCTCCAGAATCCATGAAATATGCACTCTATATGGCAGGTTTTGGAAGATAATATACAGAACAAGGCAACTCCTTTTAACAAACACCTTAGAGGCACTTCTTGTAGGGCTTGTTTTGGGAACAATTTACATCAACATAGGGTTTGATAAGGAAGGAATTGAGAAAAGGTTTGAAACATCAAGCGGGGTTTATAGGCTCTCATCATATCTCATTGCAAACACACTTGTTTTCTTGCCATACTTGCTTGTAGTTGCAATCATATACTCCATCCCAGTCTACTTCTTAGTTGGTTTATGTGCTTCTTGGATTTCTTTTGCTTATTTTGTTYTGGTCATTTGGGTAATTGTTCTCATGGCAAACTCCTTTGTGCTCTTCTTGAGTTCCCTGGCACCTAACTACATTGCTGGCACATCACTATTAACAGTGCTTCTTGCAGCATTTTTTCTGTTCTCTGGGTACTTCATCTCAAAGGAGAGTTTACCAAAGTACTGGCTTTTCATGCATTTTTTGTCCATGTACAAGTATGCACTTGATGCATTACTCATCAACGAGTACTCTTGTTTGGCCACAAGGTGTTTGATATGGTACCAAGAGAATCAAGTTTGTATGGTAACTGGGGGTGATGTGTTGCAGAAGAGGGGGCTCCAAGAAAGTCAAAAATGGACCAATGTTTACTTCTTGATTGGGTTCTTTGTGTTGTACCGTGTGCTTTGCTTGTTGGTTTTGATTAGAAGRGTTTCAAGGTCCAAAACTTGA 1737 0.4243 MEDQPPTKPSPTTKTYKLTATSISYTKSTTTTITTTTFAVPLLLFKHCTTTPPTYILKEVSLTAYPSEILAIVGPSGAGKSTLLDILSARTLPSHGTLELNNSPLIPSTFRKLSAYVPQHDACLPLLTVSETFAFSAHLLKPKTSDIAAIVSSLLSELRLTHLAXTRLSHGLSGGEHRRISIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKSICVSRHRTIVLSIHQPSFKILSCIDRILLLSKGTVVHHGSLASLQAFLHSNGFTVPHQLNALEYAMEILSQLNELKPITPPSIPESPESSSAASSISDNNGHRSKEIIRYKSSRIHEICTLYGRFWKIIYRTRQLLLTNTLEALLVGLVLGTIYINIGFDKEGIEKRFETSSGVYRLSSYLIANTLVFLPYLLVVAIIYSIPVYFLVGLCASWISFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKESLPKYWLFMHFLSMYKYALDALLINEYSCLATRCLIWYQENQVCMVTGGDVLQKRGLQESQKWTNVYFLIGFFVLYRVLCLLVLIRRVSRSKT* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3400 578 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 385 573 - -
Amo18g3400 578 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 385 573 - -
Amo18g3400 578 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 273 IPR003439 GO:0005524
Amo18g3400 578 Pfam ABC-2 type transporter 385 512 IPR013525 GO:0016020|GO:0140359
Amo18g3400 578 Gene3D - 44 291 IPR027417 -
Amo18g3400 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 264 IPR027417 -
Amo18g3400 578 SMART AAA_5 66 250 IPR003593 -
Amo18g3400 578 Pfam ABC-2 type transporter 230 290 IPR043926 GO:0140359
Amo18g3400 578 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 384 - -
Amo18g3400 578 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 5 384 - -
Amo18g3400 578 MobiDBLite consensus disorder prediction 301 316 - -
Amo18g3400 578 MobiDBLite consensus disorder prediction 295 316 - -
Amo18g3400 578 Pfam ABC transporter 57 200 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3400 Amo-Chr18 136247668 136249494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3400 50 256 Calmodulin-binding Proteins AT2G36910 30.594 1.28e-16 82.0