Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3395 ATGGAGAATGATGAACTGAGAGTGGCGAGCGCACGCTTAGGAAGCTCACGTGTATGGAGCAGTGGTGCAGTTGATGTGTTCTCAGGCTCTTCGAGACGAGACGACGACGAAGAACAGCTCAAATGGGCGGCGATCGAGAAGCTTCCAACATATCGACGCTTAACAAGAGGCATACTAACCGAATCGCAAGGCGAATACACCGAGATCGATGTCAACAAACTCGGTCCCTTGCAGAGGAAGAAATTAGTAGAAAGGCTAGTCAAGATTGCTGAACAAGACAATGAGAAGTTCTTGTTGAAATTGAGAAGAAGAATCGATAGAGTTGGACTTGATATTCCGATGATTGAAGTCCGATTCGAGCATTTGAATGTTGAAGCTGAGGCTCATGTTGGAAGCAGGGCATTGCCAACAAACCTTAACTTCTGCATTAATTTGTTAGAGGGGATCCTGAATTCTTTTCGCATTCTTCCGAGTCGAAAGAAGCCATTCACAGTTCTTCATGATGTTAGTGGAATCATCAAGCCTAGAAGGATGACACTGCTCTTAGGCCCTCCAAGCTCCGGAAAGACCACGCTGTTGCTAGCACTGGCCGGAAGACTCGGCAAAGATCTTAAATTTTCTGGGAGAGTTTCCTACAATGGTCATGAAATGGAGGAATTTGTGCCTCAGAGAACATCAGCTTACATAAGTCAAACTGATCTCCACATAGGGGAGCTTACAGTCAAAGAAACATTGGCCTTTTCAGCAAGGTGTCAAGGGATCGGAACGCGTTACGATATGCTGGCAGAATTATCAAGAAGAGAAAAGGCACAAAACATTAAGCCAGATCCTGATCTAGATATTTATATGAAGGCTGCAGCACTGGAAGGCCAAGAAACCAATGTAGTTACAGATTATATAATGAAGATTTTGGGTCTAGAAGTATGTGCTGACACCATGGTAGGGGATGAAATGATTAGGGGGATTTCTGGTGGACAGAAAAAGAGAGTCACAACTGGTGAGATGCTAGTTGGACCAGCAAGGGCACTTTTCATGGATGAAATATCAACTGGTTTGGATACTTCTACAACATTCCAAATGGTTAATTCTTTGAGACAATCCATTCACATTTTGAATGGAACTGCTGTGATATCTCTTCTCCAACCAGCACCAGAAACTTATGAACTATTTGATGATGTAATTCTCCTATCAGATGGACAAATTGTGTATCAGGGTCCAAGAGAAAATGTTCTTGAGTTCTTTGAATACATGGGATTCAAATGTCCAAACAGAAAAGGAGAAGCTGATTTCTTGCAAGAGGTAACATCAAGAAAAGATCAAGAGCAGTACTGGGCAAACAATGATGAGCCTTATACCTTTGTCTCTGTAAGAGAATTTGCAGATGCATTTCGGTCATTTCACATCGGCCGGAAACTTGGCAATGAGCTTGCTACCCCGTTCGACAAGACCAGAGGCCACCCTGCTGTTCTAACCAAGAACAAGTATGGTGTCAGCAAGAGGGAATTGCTAAGAGCTTGTGTTTCAAGAGAATTCTTGCTCATGAAAAGGAACTCCTTTGTCTACATTTTCAAGATGTGCCAATTGACTWTAWCAGGAATCATAACAATGACATTGTTCTTGAGGACTGAGATGCACCGGAACACAGTATCYGATGGCGGGATCTACATGGGAGCTTTGTACTTTGTTCTGATTATGATAATGTTCAATGGATTCTCTGAGCTATCCATGACCGTTGCAAAGCTCCCTGTTTTTTATAAGCAAAGGGACCTTCTCTTCTATCCTTCTTGGGCATACTCCTTGCCATTATGGATCCTTAAGATTCCTATCACTTTGGTAGAAGTTGGTATTTGGGTTGTCATGACTTACTATGTTATAGGCTTTGATCCAAATATTGAAAGGTTCATCAAGCAGTATCTTCTGCTAGCTTGCATCAACCAGATGGCCGCTTCACTTTTTCGATTTATTGGGGCAGTTGGGAGGAACCTCGTTGTGGCCAACGCATTTGGAGTATTTTCTTTAATTGCAATTATGGTCATGGGTGGATTCGTCCTATCTAGAGTTGATGTGAGGAAGTGGTGGTTATGGGGTTACTGGACCTCTCCCATGATGTACGGACAGAATGCTTTAGCTGTGAATGAATTCCTGGGAAACAGTTGGAAACATGTTCCACCTAATTCAACAGAATCATTAGGTGTTCAGGTCTTAAAAGCACGTGGAATATTCCCTGAAGCATATTGGTATTGGATTGGAGTAGGAGCTTCCATTGGATACATGTTACTCTTCAATTTGCTTTTCCCTTTGGCCTTGCATTTTCTTGACCCATTTGGCAAACCACAAGCATTGATATCAGAAGAAGCTTTAGCTGAGAGGAATTCTGTTAGGAATGATCACATCATTGAACTTTCTTCTGGAAGGAATGGAGCTTCTGATAAAAGTAATGGAAGAAGTGTGTCATCAAGAACCTTGTCTGCAAGAGTTGTTGCCATTAATGGAACCGATCGCGACAGAAAGTGTGGGATGGTTCTTCCTTTCACGCCTCTTTCTATCACTTTTGATGAAATCAGATATGCAGTAGACATGCCACAGGAAATGACGGCCCAAGGCATAGTTGAAGATAAAGTTGAACTGTTGAAGGGTATAAGTGGAGCTTTTAGACCAGGAGTTCTAACAGCTCTAATGGGTGTAAGTGGAGCTGGTAAAACCACTCTAATGGATGTGTTATCTGGGAGGAAAACTGCAGGATATATTCAAGGYCAAATCACCATATCAGGGTACCCTAAGAAGCAAGAAACATTCGCTCGCATATCCGGATATTGTGAGCAAACTGACATACACTCTCCCCATGTCACAGTCTATGAGTCACTTGTTTATTCTGCATGGCTAAGGTTACCCCCTGAGGTTGATTCTTCYACAAGAGAGATGTTCATTGAAGAAGTTATGGAGCTGGTAGAGCTGAATTCATTGAGAGATGCATTGGTTGGATTACCTGGAGTGAATGGTTTGTCCACAGAGCAGCGCAAGAGGCTAACTATTGCGGTTGAACTTGTTGCAAATCCTTCTATAATATTCATGGATGAACCTACCTCYGGCCTTGATGCCAGGGCTGCTGCTATAGTTATGAGGACAGTGAGGAACACAGTCAACACAGGCCGAACCGTGGTGTGCACAATCCACCAGCCTAGCATTGATATATTTGATGTTTTCGATGAGTTATTTCTCTTGAAGCGTGGAGGTGAAGAGATATATGTTGGGCCATTAGGCCGCCATTCTTCTCATCTTATCAGTTACTTTGAGGGAATTAATGGAGTGCCAAAGATCAAGAATGGTTATAATCCTGCAACCTGGATGTTGGAGGTTACTTCAGAARCACAAGAGGAAGCTCTAGGAATTAACTTTGCTGAACTATACAAGAATTCTGATCTATACAGGGGAAACAAGGCGCTGATAAGTGAACTAAGTACACCCCCATCAGATTCTAAGGACTTATACTTTCCAACAAAGTACTCACAGTCCTTCGTAACCCAATGTAAGGCTTGCCTTTGGAAACAGAACCTATCATATTGGAGAAACCCTCCATACAGTGCAGTGAGACTCTTGTTCACAACATTCTTAGCCCTTTTGTTTGGGACAATTTTCTGGGATTTTGGCTCCAAAAGGAAAAGAGCACAAGATATATTTAATGCCATGGGATCCATGTATGCTGCAGTACTCAGCATTGGAGTACAAAATGCTAGTTCTGTGCAACCTGTTGTGGCCATTGAGAGAACAGTCTTTTATAGAGAAAAAGCTGCCGGCATGTACTCAGCTTTGCCATATGCATTTGGACAGGTTGCTATTGAGATCCCATACATATTGCTACAGACCCTGGCATATGGTGTCATAGTGTATGCCATGATTGGGTTTGAGTGGGCGGCTGCCAAGTTCTTTTGGTTTCTGTTCTTCATGTTCTTTACATTTTTTTACTACACCTTATACGGGATGATGGCTATTGGTATTACCCCAGATCACCATATTGCTGCCATAGTTTCTCTTGGGTTCTACTTGATATGGAACCTTTTCTCAGGATTTGTCATTCCTAGAACTAGAATGCCAGTGTGGTGGAGATGGTACTTTTGGATTTGTCCTGTGGCATGGACCATGTATGGATTAGTCACTTCACAGTTYGGTGATGTAACTGAACGCCTAGAGACTGGAGAAACTGTGGGAGATTTTGTAGAGAGATATTTTGGATATAGAGATGATTTCATTGGTATAGCTGCTGCTGTTGTTGTTGGCTTCACATTGCTCTTTGGATTYACCTTTGCCTTTTCAATTAAGGCATTTAATTTCCAAAAGAGATGA 4341 0.4229 MENDELRVASARLGSSRVWSSGAVDVFSGSSRRDDDEEQLKWAAIEKLPTYRRLTRGILTESQGEYTEIDVNKLGPLQRKKLVERLVKIAEQDNEKFLLKLRRRIDRVGLDIPMIEVRFEHLNVEAEAHVGSRALPTNLNFCINLLEGILNSFRILPSRKKPFTVLHDVSGIIKPRRMTLLLGPPSSGKTTLLLALAGRLGKDLKFSGRVSYNGHEMEEFVPQRTSAYISQTDLHIGELTVKETLAFSARCQGIGTRYDMLAELSRREKAQNIKPDPDLDIYMKAAALEGQETNVVTDYIMKILGLEVCADTMVGDEMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDTSTTFQMVNSLRQSIHILNGTAVISLLQPAPETYELFDDVILLSDGQIVYQGPRENVLEFFEYMGFKCPNRKGEADFLQEVTSRKDQEQYWANNDEPYTFVSVREFADAFRSFHIGRKLGNELATPFDKTRGHPAVLTKNKYGVSKRELLRACVSREFLLMKRNSFVYIFKMCQLTXXGIITMTLFLRTEMHRNTVSDGGIYMGALYFVLIMIMFNGFSELSMTVAKLPVFYKQRDLLFYPSWAYSLPLWILKIPITLVEVGIWVVMTYYVIGFDPNIERFIKQYLLLACINQMAASLFRFIGAVGRNLVVANAFGVFSLIAIMVMGGFVLSRVDVRKWWLWGYWTSPMMYGQNALAVNEFLGNSWKHVPPNSTESLGVQVLKARGIFPEAYWYWIGVGASIGYMLLFNLLFPLALHFLDPFGKPQALISEEALAERNSVRNDHIIELSSGRNGASDKSNGRSVSSRTLSARVVAINGTDRDRKCGMVLPFTPLSITFDEIRYAVDMPQEMTAQGIVEDKVELLKGISGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTAGYIQGQITISGYPKKQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSSTREMFIEEVMELVELNSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFDVFDELFLLKRGGEEIYVGPLGRHSSHLISYFEGINGVPKIKNGYNPATWMLEVTSEXQEEALGINFAELYKNSDLYRGNKALISELSTPPSDSKDLYFPTKYSQSFVTQCKACLWKQNLSYWRNPPYSAVRLLFTTFLALLFGTIFWDFGSKRKRAQDIFNAMGSMYAAVLSIGVQNASSVQPVVAIERTVFYREKAAGMYSALPYAFGQVAIEIPYILLQTLAYGVIVYAMIGFEWAAAKFFWFLFFMFFTFFYYTLYGMMAIGITPDHHIAAIVSLGFYLIWNLFSGFVIPRTRMPVWWRWYFWICPVAWTMYGLVTSQFGDVTERLETGETVGDFVERYFGYRDDFIGIAAAVVVGFTLLFGFTFAFSIKAFNFQKR* 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3395 1446 Pfam ABC-2 type transporter 1174 1388 IPR013525 GO:0016020|GO:0140359
Amo18g3395 1446 Pfam ABC-2 type transporter 502 714 IPR013525 GO:0016020|GO:0140359
Amo18g3395 1446 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1446 - -
Amo18g3395 1446 Pfam ABC-transporter N-terminal 90 141 IPR029481 -
Amo18g3395 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 872 1085 IPR027417 -
Amo18g3395 1446 Pfam ABC transporter 877 1029 IPR003439 GO:0005524
Amo18g3395 1446 Gene3D - 151 458 IPR027417 -
Amo18g3395 1446 Pfam ABC-2 type transporter 381 432 IPR043926 GO:0140359
Amo18g3395 1446 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 9 1446 - -
Amo18g3395 1446 Pfam ABC transporter 166 348 IPR003439 GO:0005524
Amo18g3395 1446 CDD ABCG_PDR_domain2 846 1084 IPR034003 -
Amo18g3395 1446 SMART AAA_5 886 1078 IPR003593 -
Amo18g3395 1446 SMART AAA_5 175 407 IPR003593 -
Amo18g3395 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 849 1101 IPR003439 GO:0005524
Amo18g3395 1446 Pfam Plant PDR ABC transporter associated 719 782 IPR013581 -
Amo18g3395 1446 Gene3D - 865 1091 IPR027417 -
Amo18g3395 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 423 IPR027417 -
Amo18g3395 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 423 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3395 Amo-Chr18 136118388 136128667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3395 874 1103 Calmodulin-binding Proteins AT2G36910 24.473 1.11e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3395 K08711 - gmx:100804030 2474.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2056 08 33260757 33270213 Amo18g3395 18 136118388 136128667 hybridization
Amo06g2894 06 94530551 94539597 Amo18g3395 18 136118388 136128667 PCT