Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3380 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTGTATATCCATGATTACCTGGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAGGGGAAAGTTTCCTCTGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATTTTTATTGCGAGGACTAATGAGAAGCACTCGGAGGTTGCAGCCTCTTATATTGAGCAGCCACCTCAACCACAACCGCAGCAGCAGCAGCAACCACCGCCACAACAACAGCAAGGTAGGGACAGGGCTAATCTCATAAACGGCAATACGAATGGGTTAGTTGGGAACCAGGGAACTGCCAATGCACTAGCAACAAAGATGTATGAGGAGAGGCTAAAGAGAGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTTGGTGGTGAGAACATGGGTCAAATTTTGGATCCTAATCATGCCTCAATTTTGAAGTCAGCTGCTGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTACTGCGGCTGGCATGCCTCCACAAGTTCAAGCTCGTAGTCAGCAATTAGCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTACTGAACCCTAGAGCTGCGGGTGCTGAAGGATCATTGATGGGAATTCCTGGACCAAATCAAGGTAGTAACAATTTGACTTTGAAGGGATGGCCACTCACAGGTTTGGAGCAACTCCGCTCTGGTCTACTCCAGCAACAAAAGCCTTTCATGCAGGCTCCTCAGCCGTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGATAATGCTTGCGCAGCAAGGCTTGGCATCTCCATCTGCCAGTGATGACAATAGAAGACTCAGAATGCTGTTGAACAATAGGAGTATGAGCCTAAACAAGGATGGTCTTTCAAATCCTGTTGATGTAGTGCCAAATGTTGGATCTCCACTTCAAGGTGGCGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAATTGGCTCAAATGCAGCAGCAACATCAGCAACAGCCAAACAGCAATTCACAGCTGCAGCAACTTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGACTTCAAGCCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTTACTGCAGATGGTAGCATGTCGAACTCATTTAGAGGCAATGATCAGGCCTCGAAAAACCAGATTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTACAGGAACTGCTAATACAACAGGTCCATCACCAAGTTCGGCACCCTCGACTCCCTCGACTCATACACCCGGAGATGTGATATCTATGCCATCTATGACTGGTACTACTTCTTCAAAGCCATTAATGATGTTCAGCACTGACGGCACCGGGACTCTTACATCACCTTCAAACCAATTGGCTGATGTGGATCGCTTTGTGGAGGACGGATCTCTTGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACGGATCCTAGAGATACGGTCGGTCGTTGTATGGATGTAAGCAAAGGCTTCACGTTTTCTGATGTAAATTCTGTACGTGCTAGCACAAGCAAAGTTGTATGTTGTCATTTTTCATCTGATGGGAAATTACTTGCAAGCGGTGGGCACGACAAGAAGGCTGTTTTATGGCACACGGATACCTTGAAGCAGAAGGCTGTTCTTGAAGAGCATTCGTCTATGATCACTGATGTTCGTTTTAGTCCAAGCATGCCTCGTTTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGACATTGATAATCCTGGTTATTCGCTTCGCACCTTTACAGGACATTCAGCATCTGTAATGTCCCTAGATTTCCATCCAAATAAAGAGGATCTTATCTGCTCTTGTGATGGTGACGGCGAGATACGATATTGGAGCATAAATAATGGAAGTTGTGCAAGAGTCTTCAAGGGTGGCACCGCCCAGATGAGATTTCAACCACGTCTAGGGAGGTACCTGGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAGACACAAGGATGCCGATATTCATTAAAGGGCCACACGAAGCCGATACATTCCGTGTGTTGGGACCCTTCCGGGGAGTTGCTGGCATCCGTGAGTGAGGACTCGGTCCGGGTTTGGACTCTAGGAACCGGGAGTGAAGGGGAATGTGTTCATGATCTTAGCAGTAATGGCAGTAAGTTTCAATCATGTGTCTTTCACCCGTCTTATCCGTCGTTGCTCGTCATTGGCTGTTACCAGGCAAGTCTACTTTCCTTATATTCATTGGAGCTGTGGAACATGACGGAGAACAAGACGATGACTCTGACAGCTCACGAAGGTCTCATCGCCTCCCTCGCCGGTTCGACTGTAAATGGTTTGGTTGCTTCGGCGAGTCATGACAAGTTCATCAAGCTCTGGAAGTGA 2511 0.4671 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEQPPQPQPQQQQQPPPQQQQGRDRANLINGNTNGLVGNQGTANALATKMYEERLKRDSLDEAAMKQRFGGENMGQILDPNHASILKSAAATGQPSGQVLHGATAAGMPPQVQARSQQLAGSTPDIKSEINPVLNPRAAGAEGSLMGIPGPNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQIMLAQQGLASPSASDDNRRLRMLLNNRSMSLNKDGLSNPVDVVPNVGSPLQGGGPPFPRGDTDMLMKLKLAQMQQQHQQQPNSNSQLQQLQQHALSNQQSQTSSHNMHQQDKVGGGGGSVTADGSMSNSFRGNDQASKNQIGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPSMTGTTSSKPLMMFSTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDTLKQKAVLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDIDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCARVFKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQGCRYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHDLSSNGSKFQSCVFHPSYPSLLVIGCYQASLLSLYSLELWNMTENKTMTLTAHEGLIASLAGSTVNGLVASASHDKFIKLWK* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3380 836 Gene3D - 679 836 IPR015943 GO:0005515
Amo18g3380 836 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 80 IPR044716 GO:0003714
Amo18g3380 836 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 80 - -
Amo18g3380 836 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 92 836 IPR044716 GO:0003714
Amo18g3380 836 SUPERFAMILY WD40 repeat-like 543 836 IPR036322 GO:0005515
Amo18g3380 836 MobiDBLite consensus disorder prediction 81 118 - -
Amo18g3380 836 Pfam WD domain, G-beta repeat 708 742 IPR001680 GO:0005515
Amo18g3380 836 Pfam WD domain, G-beta repeat 799 836 IPR001680 GO:0005515
Amo18g3380 836 Pfam WD domain, G-beta repeat 547 576 IPR001680 GO:0005515
Amo18g3380 836 Pfam WD domain, G-beta repeat 626 663 IPR001680 GO:0005515
Amo18g3380 836 Pfam WD domain, G-beta repeat 585 619 IPR001680 GO:0005515
Amo18g3380 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 622 - -
Amo18g3380 836 SMART WD40_4 705 743 IPR001680 GO:0005515
Amo18g3380 836 SMART WD40_4 580 619 IPR001680 GO:0005515
Amo18g3380 836 SMART WD40_4 538 577 IPR001680 GO:0005515
Amo18g3380 836 SMART WD40_4 666 702 IPR001680 GO:0005515
Amo18g3380 836 SMART WD40_4 797 836 IPR001680 GO:0005515
Amo18g3380 836 SMART WD40_4 749 790 IPR001680 GO:0005515
Amo18g3380 836 SMART WD40_4 623 663 IPR001680 GO:0005515
Amo18g3380 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 586 IPR001680 GO:0005515
Amo18g3380 836 MobiDBLite consensus disorder prediction 351 390 - -
Amo18g3380 836 CDD WD40 545 836 - -
Amo18g3380 836 Gene3D - 521 678 IPR015943 GO:0005515
Amo18g3380 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 712 752 IPR001680 GO:0005515
Amo18g3380 836 ProSitePatterns Trp-Asp (WD) repeats signature. 606 620 IPR019775 -
Amo18g3380 836 MobiDBLite consensus disorder prediction 401 477 - -
Amo18g3380 836 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 92 836 - -
Amo18g3380 836 Pfam LisH 10 36 IPR006594 GO:0005515
Amo18g3380 836 SMART Lish 8 40 IPR006594 GO:0005515
Amo18g3380 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 672 IPR001680 GO:0005515
Amo18g3380 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 622 IPR001680 GO:0005515
Amo18g3380 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 804 836 - -
Amo18g3380 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 668 - -
Amo18g3380 836 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Amo18g3380 836 MobiDBLite consensus disorder prediction 93 118 - -
Amo18g3380 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 804 836 IPR001680 GO:0005515
Amo18g3380 836 MobiDBLite consensus disorder prediction 351 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3380 Amo-Chr18 135878497 135886321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3380 590 835 Miscellaneous Gene Families AT5G08390 22.619 8.14e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Amo18g3380 WD40 0.054 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3380 - - peu:105122363 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2045 08 33024819 33032596 Amo18g3380 18 135878497 135886321 hybridization
Amo06g2995 06 96222642 96232584 Amo18g3380 18 135878497 135886321 PCT
Amo18g3380 18 135878497 135886321 Amo06g2995 06 96222642 96232584 PCT