Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3357 ATGCTGTTCGGCATTAGGGTGGTGGTGGACTCCATGAGGAAAAGCGTCAGTATGAACAATCTGTCGCAGTACGTGCATCCTCAAGATGACTCCAACAACAACAAAGACGCTGCCTTCTCCACCACCGGTTACGCGTCTACCGATGACGCTGCTCCTCACAACTTCGGCAAGAACCGCGAGCGCGAGCGCAAGCGAGGTTACCGAAGCTCCGATTCCACCTCGAGTCCAACTCAATTAGCTCGATCGAAGAAGATGTGTAGCACCTTTGCCGCCGCCGCAGACTCTTCCATCTCCGGCGACGGTGACTCCCCCACTGCCGTCAAGATTATGCTATTCGGCATTAGGGTGGTGGTGGACTCCATGAGGAAAAGCTTCAGTATGAACAATCTGTCGCAGTACGTGCATCCTCAAGATGACTCCAACAACAACAAAGACGCTCCTCACAACTTCGGCAAGAACCGCGAGCGCGAGCGCAAGCGAGGTGTTCAGTGGACGGAGGAAGAGCACAAGTTGTTCCTGGTGGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGGATCTCTAGGAACTACGTCAAGACTCGGACGCCCACGCAGGTCGCCAGCCATGCTCAGAAGTACTTCCTCCGCCGGAGCAATCTCAACCGCTGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGATTCGATCCAGAACGGAGACAGTGTGCCTCATTCACAGCCTCTGTGCCCTGCAGCTCCTGAGAATAGCAACACCAATGGATTTCCGATGGTGCCGGTGTATCCGTTGGGGGTTGGTCCAGGTGCAAACATGGAGCTTAATGTGCAAACCAAGCTACTCCATCCGATTCCTGTTGCTTCAAATCCTAAAACATGCACCGTGTCTGATGTTCCCTCCGGCTCTAATTCGCCCCTCAACTTGCCAACATTGTCCCTGGGACTATCCTTCACATCTGATCAAAGACAGACTCCATCAAGACATTCGGCTTTCCATTCGATTCCGAGTTTAAATAACGGAGATAGCATCATAAGTGTTGCTTGA 1044 0.5278 MLFGIRVVVDSMRKSVSMNNLSQYVHPQDDSNNNKDAAFSTTGYASTDDAAPHNFGKNRERERKRGYRSSDSTSSPTQLARSKKMCSTFAAAADSSISGDGDSPTAVKIMLFGIRVVVDSMRKSFSMNNLSQYVHPQDDSNNNKDAPHNFGKNRERERKRGVQWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRCRRRSSLFDITTDSIQNGDSVPHSQPLCPAAPENSNTNGFPMVPVYPLGVGPGANMELNVQTKLLHPIPVASNPKTCTVSDVPSGSNSPLNLPTLSLGLSFTSDQRQTPSRHSAFHSIPSLNNGDSIISVA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3357 347 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 3 66 - -
Amo18g3357 347 Gene3D - 162 214 - -
Amo18g3357 347 ProSiteProfiles SANT domain profile. 159 212 IPR017884 -
Amo18g3357 347 MobiDBLite consensus disorder prediction 23 48 - -
Amo18g3357 347 MobiDBLite consensus disorder prediction 23 81 - -
Amo18g3357 347 Pfam Myb-like DNA-binding domain 163 208 IPR001005 -
Amo18g3357 347 PANTHER KIN2 3 66 - -
Amo18g3357 347 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 159 210 IPR006447 GO:0003677
Amo18g3357 347 MobiDBLite consensus disorder prediction 148 162 - -
Amo18g3357 347 CDD SANT 164 208 IPR001005 -
Amo18g3357 347 SUPERFAMILY Homeodomain-like 158 212 IPR009057 -
Amo18g3357 347 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 101 347 - -
Amo18g3357 347 PANTHER KIN2 101 347 - -
Amo18g3357 347 MobiDBLite consensus disorder prediction 132 147 - -
Amo18g3357 347 ProSiteProfiles Myb-like domain profile. 156 208 IPR001005 -
Amo18g3357 347 SMART sant 160 210 IPR001005 -
Amo18g3357 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 212 IPR017930 -
Amo18g3357 347 MobiDBLite consensus disorder prediction 132 162 - -
Amo18g3357 347 MobiDBLite consensus disorder prediction 53 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3357 Amo-Chr18 135251437 135288188 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo18g3357 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3357 - - aip:107632799 462.611