Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3353 ATGTTGGCGACAATAATGTACTCATCCGAGGGAGAAGTATACAACCTGTCATCAAATGCAGAGTGCATGCATGGAGAAGAATTGAGTCAATCAAAAGAACATGAAAAGATCAATGACTTGCGAGAAAGAGGATATATGGAACACGGATGTCAACATTACCGGAAAAGATGCCGTATTAGGGCCCCCTGCTGCAACGAGATTTTCCACTGTCGCCACTGTCATAATGAGGCAAAGTATGATATCAGGATTGTTCCGAAGCTTAGACATGACATTCCCCGTCATCAAGTTAAACATGTGATATGTTCACTTTGTGGGATTGAACAAGAGGTTCAGCAAAACTGCATTAATTGTGGAGTTTGTATGGGCAAGTACTTTTGCGGGATATGCAAGCTTTTTGATGACGATGTATCTAAGAAACAATACCATTGCGGCGGCTGTGGAATTTGCAGAACTGGAGGATCTGAAAATTACTTCCACTGCGACAAGTGTGGTTGTTGCCACTCAACTCTGCTAAAAAATAGTCACGCTTGTGTGGAGAAGGCAATGCATCATGATTGTCCTGTTTGTTTTGAGTATTTGTTCRAATCGATGCATGAAATCGCTGTCTTGCCATGTGGACATACAATCCATATCAACTGTCTGAATGAAATGAGACAGCATTTACAGTATGCATGCCCTCTTTGCTCAAAGTCAGTTTTTGATATGTCAAAGGTTTGGGAGAAGTTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACTATATCAAAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGTAGAACTAGTAACGTAAAGTACCATCTTATTGCTCAAAAGTGCTTGAATTGCAAATCCTACAACACAAGACAAACTTGA 882 0.4048 MLATIMYSSEGEVYNLSSNAECMHGEELSQSKEHEKINDLRERGYMEHGCQHYRKRCRIRAPCCNEIFHCRHCHNEAKYDIRIVPKLRHDIPRHQVKHVICSLCGIEQEVQQNCINCGVCMGKYFCGICKLFDDDVSKKQYHCGGCGICRTGGSENYFHCDKCGCCHSTLLKNSHACVEKAMHHDCPVCFEYLFXSMHEIAVLPCGHTIHINCLNEMRQHLQYACPLCSKSVFDMSKVWEKFDLEIAATPMPELYQNKMVWILCNDCGRTSNVKYHLIAQKCLNCKSYNTRQT* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3353 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 249 IPR013083 -
Amo18g3353 293 SUPERFAMILY CHY zinc finger-like 47 121 IPR037274 GO:0008270
Amo18g3353 293 ProSiteProfiles Zinc finger RING-type profile. 186 229 IPR001841 -
Amo18g3353 293 SMART ring_2 186 228 IPR001841 -
Amo18g3353 293 Pfam CHY zinc finger 50 131 IPR008913 GO:0008270
Amo18g3353 293 ProSiteProfiles Zinc finger CHY-type profile. 43 119 IPR008913 GO:0008270
Amo18g3353 293 SUPERFAMILY Zinc hairpin stack 122 179 IPR037275 -
Amo18g3353 293 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 293 - -
Amo18g3353 293 Pfam Ring finger domain 185 228 IPR001841 -
Amo18g3353 293 Pfam Zinc-ribbon 233 291 IPR039512 -
Amo18g3353 293 ProSiteProfiles Zinc finger CTCHY-type profile. 121 185 IPR017921 -
Amo18g3353 293 SUPERFAMILY RING/U-box 184 232 - -
Amo18g3353 293 Gene3D - 257 293 - -
Amo18g3353 293 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 15 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3353 Amo-Chr18 135144798 135150881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3353 48 291 C2H2 Transcription Factor Family AT3G18290 39.200 3.58e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3353 K10144 - gmx:100803569 521.546