Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3348 ATGCACRCGCACTCGTCGATTCGGGATCGCACGCACGAATTCCATACCATCGCCGAGAGGTTGAAGAAATCTTCTTCCTCAAACGGACCCACAACCACTTCCTCYTCATCTGCTGCTTCTTCTTCTTCCAGATCGGATGAACAGCGATCCGCAATCGCAATTCAGTCCGAGTTCAATCGAAGGGCTTCCAAGATTGGCTATGGGATCCACCAAACCTCTCAGAAGCTCGCCAAGCTCGCCAAGTTGGCGAAGAGGACTTCGGTTTTTGATGACCCTACAATGGAAATCCAAGAGCTTACGAGTGTAATCAAGCAAGACATTACTGCGTTGAACTCTGCAGTTGTGGATCTTCAGTTGCTATGCAACTCGAGGAATGAGAGCGGGAACGTTTCTGCCGACACTACCAGCCATTCGACTACTGTTGTAGATGACCTCAAGACCCGTTTGATGAGCACCACCAAGGAGTTCAAAGAAGTTCTCACCATGAGAACCGAGAACTTGAAAGTACATGAGAATAGGAGACAATTGTTTTCGGCCTCTGGTTCTAAGGATGCTGCTAATCCTTTTGTCCGTCAACGGCCATTAGCTACAAGGACGGCTGCTAGTGCTTCTAATGCCCCCGCAGCTCCATGGGCTAGTGGGTCTTCATCTTCATCTGAGTTGTTTCCTAAGAAGCAGGCAGATGGGGAGAGTCAGCCATTGCTACAGCAACAGCAACAACAACAGCAGCARATGGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCATAATGTTGAATCCACYATTCATGAACTCAGCAATATYTTTAATCAATTAGCAACTCTCGTTTCCCAACAAGGAGAGCTTGCTATCAGAATTGATGAGAACATGGACGATACATTGGCAAACGTAGAAGGTGCACAAGGGGCTCTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTCATGGTTTTCTTATTTTTTGTGGCATAG 1029 0.4577 MHXHSSIRDRTHEFHTIAERLKKSSSSNGPTTTSSSSAASSSSRSDEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLCNSRNESGNVSADTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSASGSKDAANPFVRQRPLATRTAASASNAPAAPWASGSSSSSELFPKKQADGESQPLLQQQQQQQQQMVPLQDSYMQSRAEALHNVESTIHELSNIFNQLATLVSQQGELAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3348 342 MobiDBLite consensus disorder prediction 1 20 - -
Amo18g3348 342 MobiDBLite consensus disorder prediction 174 248 - -
Amo18g3348 342 CDD SNARE_syntaxin5 253 331 - -
Amo18g3348 342 Pfam SNARE domain 287 338 IPR000727 -
Amo18g3348 342 Gene3D - 53 305 - -
Amo18g3348 342 SUPERFAMILY t-snare proteins 56 305 IPR010989 GO:0016020|GO:0016192
Amo18g3348 342 SMART tSNARE_6 245 312 IPR000727 -
Amo18g3348 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 250 312 IPR000727 -
Amo18g3348 342 PANTHER SYNTAXIN 6 341 IPR045242 -
Amo18g3348 342 MobiDBLite consensus disorder prediction 1 54 - -
Amo18g3348 342 PANTHER SYNTAXIN-32-LIKE 6 341 - -
Amo18g3348 342 MobiDBLite consensus disorder prediction 197 248 - -
Amo18g3348 342 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 5 23 IPR021538 -
Amo18g3348 342 ProSitePatterns Syntaxin / epimorphin family signature. 256 295 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo18g3348 342 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3348 Amo-Chr18 135011638 135016333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3348 2 342 SNARE and Associated Proteins AT3G24350 64.365 1.70e-145 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3348 K08490 - gmx:100777961 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2033 08 32782856 32787048 Amo18g3348 18 135011638 135016333 hybridization