Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3345 ATGGCGGAAGATAATAACGAAGTCACACAAACATTTAAGGATTTGGGATTATCTGAGGAATTGGTGGAAACTTGTGATAAATTAGGTTGGAAAAATCCATTGAAGATACAATCAGAAGCGATTCCTCTTGCACTACAAGGAAAAGATGTGATTGGACTCGCCCAAACGGGTTCTGGAAAAACTGGAGCTTTTGCACTTCCCATATTGCATGCCCTCTTAGAAGCGCCACGCCCCAATGATTTCTTCGCATGTGTGTTGTCTCCCACAAGAGAACTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTTTAGGGTCTGGGATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAGCAATCCATCAAGATAGCAAAGCAGCCTCATATTATTGTCGGAACACCAGGACGCGTTTTAGATCACCTCAAAAACACCAAAGGATTTTCTCTTAATAGATTAAAATATTTGGTCCTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTATACAATTGATTCCTCGCGAGCGGAGAACATTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAAAAGCTCCAAAGAGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCCTCTAAGTATTCTACTGTTGACACACTGAAGCAGCAATATCGTTTCTTACCTGCCAAACACAAGGATTTCTACCTTGTGTACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGTACATGTGATTCAACTCGTCTTCTTGCTTTGATTCTTAGTAATCTTGGTCTAAAAGCCATCCCAATTAATGGTCATATGACCCAGTCAAAAAGGCTTGGAGCCTTGAATTTATTCAAGTCTGGGGCTCGCAATATTCTCATTTGTACTGATGTAGCTAGTAGAGGATTGGATATTCCAATAGTAGATGTTGTGATTAACTATGACATCCCCACAAACTCCAAAGTAAGATGTGCTATAATTAATCTAACTTTTGAATTTAGCCTCATGTTATTTGTTCTACAAATTCTAGGTTGA 1071 0.3996 MAEDNNEVTQTFKDLGLSEELVETCDKLGWKNPLKIQSEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNDFFACVLSPTRELAIQIAEQFEALGSGIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSLNRLKYLVLDEADRLLNEDFEESLNEIIQLIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDFYLVYILTEMAGSTSMVFTRTCDSTRLLALILSNLGLKAIPINGHMTQSKRLGALNLFKSGARNILICTDVASRGLDIPIVDVVINYDIPTNSKVRCAIINLTFEFSLMLFVLQILG* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3345 356 CDD DEADc_DDX47 11 215 IPR044765 GO:0005524
Amo18g3345 356 CDD SF2_C_DEAD 226 333 - -
Amo18g3345 356 Gene3D - 220 337 IPR027417 -
Amo18g3345 356 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 241 356 IPR001650 -
Amo18g3345 356 Pfam DEAD/DEAH box helicase 35 203 IPR011545 GO:0003676|GO:0005524
Amo18g3345 356 PANTHER BNAC02G41920D PROTEIN 4 333 - -
Amo18g3345 356 Pfam Helicase conserved C-terminal domain 241 332 IPR001650 -
Amo18g3345 356 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 160 168 IPR000629 -
Amo18g3345 356 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Amo18g3345 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 332 IPR027417 -
Amo18g3345 356 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 214 IPR014001 -
Amo18g3345 356 PANTHER RNA HELICASE 4 333 - -
Amo18g3345 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 214 IPR027417 -
Amo18g3345 356 SMART helicmild6 265 337 IPR001650 -
Amo18g3345 356 SMART ultradead3 29 229 IPR014001 -
Amo18g3345 356 Gene3D - 1 219 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3345 Amo-Chr18 134949439 134956376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3345 4 345 Eukaryotic Initiation Factors Gene Family AT3G19760 29.769 1.96e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3345 K14777 - gmx:100775796 599.742