Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3310 ATGGCAGTGGAGTTAATGGGATTCCCAAAAATGGACGACCCAAATAACAAAGCCATACAAGAAGCAGCATCCGAGGGCATAAAGGGAATGGAGCACCTCGTTCGCCTTCTTTCAAACCCTTCGCAAAACGACACCACTGACCTCACAAACGTCACCGTTTCCAAGTTCCGCAAACTCATCTCCTTACTTAACCGCACCGGCCGCGCCCGCTTCCGCCGTGCACCAATTTCAAATTCCTCAGACACTTTATCCTTCTCTCCGGCGACCTTCACTCCTCCCCCGCCGCCGCCGCACTCGCAGCCACAGCCACAGCCACAGCTACAGCCACAGCCGCTTGCGGTTGCTCCGGTCACCGTACACCACCCTTCTCCTCTTCTTCCGCCGCAGACTCTCACTCTTGACTTCACCAAACCTAACAACAGCTTCCTCACCAACGTATCCAACAACGCCGGAGCCAAATCCATGGAGCTGGAGTTCTCGAAGGACACGACGACGTTTAGCGTCTCGTCGAACTCGTCGTTTATGTCCTCCGCCATCACCGGCGACGGCAGCGTCTCCAGCGGCAAGCTCGGAACCTCGATCTTTCTCAACCCTGCCGGGAAATTGCCTCTCTCGTCGTCGGCGCCGGCTCCGGCTCCGGTCAAGAAAAGGTGTCACGACCACCACTCCGACGATGTATCCGGCAAGGTCTCCGGTTCTTCCAGCAAGTGCCACTGCATCAAGCGAAGGAAAAATAGGGTTAAGAAGACGATAAGAGTGCCGGCAATTAGTTCAAAGATAGCTGATATTCCGGCGGACGAGTACTCATGGAGGAAGTACGGTCAGAAACCGATCAAAGGGTCGCCGTACCCAAGGGGTTATTATAAGTGCAGTACTGTGAGAGGGTGTCCGGCGAGGAAACACGTGGAGCGCGCACCAGATGATCCATCTATGCTGATCGTGACGTACGAAGGGGAGCACCGTCACTCCATTCAGACCGCGATGCAGGATAACATTTCTTCTGCGGGAGTGGGTTTGGTATTCGGGTCAACGTAA 1035 0.5507 MAVELMGFPKMDDPNNKAIQEAASEGIKGMEHLVRLLSNPSQNDTTDLTNVTVSKFRKLISLLNRTGRARFRRAPISNSSDTLSFSPATFTPPPPPPHSQPQPQPQLQPQPLAVAPVTVHHPSPLLPPQTLTLDFTKPNNSFLTNVSNNAGAKSMELEFSKDTTTFSVSSNSSFMSSAITGDGSVSSGKLGTSIFLNPAGKLPLSSSAPAPAPVKKRCHDHHSDDVSGKVSGSSSKCHCIKRRKNRVKKTIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPSMLIVTYEGEHRHSIQTAMQDNISSAGVGLVFGST* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3310 344 MobiDBLite consensus disorder prediction 206 229 - -
Amo18g3310 344 Pfam WRKY DNA -binding domain 266 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g3310 344 SUPERFAMILY WRKY DNA-binding domain 262 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo18g3310 344 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g3310 344 PANTHER WRKY PROTEIN 15 337 - -
Amo18g3310 344 MobiDBLite consensus disorder prediction 73 87 - -
Amo18g3310 344 MobiDBLite consensus disorder prediction 73 108 - -
Amo18g3310 344 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 337 IPR044810 GO:0003700
Amo18g3310 344 Pfam Plant zinc cluster domain 215 262 IPR018872 -
Amo18g3310 344 MobiDBLite consensus disorder prediction 88 108 - -
Amo18g3310 344 Gene3D WRKY domain 249 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo18g3310 344 SMART WRKY_cls 264 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3310 Amo-Chr18 134421929 134424347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3310 1 343 WRKY Transcription Factor Family AT2G24570 53.125 3.18e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo18g3310 WRKY 5.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3310 - - gmx:100127394 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1986 08 32133984 32136488 Amo18g3310 18 134421929 134424347 hybridization