Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3301 ATGCAACATAGGCTGAAGTTGCAGCAACAACAACAACAAGCCCTAATGCAACAAGCCTTGCTTCAACAACAGCAGATGTACCACCCTGGCATGCTTGCTGCTGCAATGTCTCAGATGGAGCCAGTTCCAGGTGGAAATCTACCCCCTGGGTTTGACACTTCTTCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACGGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCTCTGGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTATCATGATCGAGCATCTGCAGCCCTTGCGATAATGACATTGCATGGAAGGCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGAGAGGATACTTCAGGGCACTACAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCGACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCGGATGCAAGGGTTATGTGGGATCACAAAACTGGGCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCACAAAGTGCTATAAATGATATGACAGGTAAATGGCTGGGAAATAGGCAGATACGATGCAATTGGGCAACTAAGGGTGCCAGTACTAGCTCCAATGAAGAGAAGAGCACTGACAACCAAAATGCTGTTGTTCTTACAAATGGGTCTTCAGATGGAGGTCAAGATAACAGCAATGAGGATGCCCCTGAAAACAATCCTGCATACACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCACTGTCAATTTCATGCACTGGGGGCTGGAGTTATTGAGGAGGTTCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGATGGCTAATGGAAGAATAGTTCGTGGGAAGTCTATGAAGTGTTCATGGGGCAGCAAGCCAACTCCTCCTGGAACAGCTTCAAATCCTCTGCCTCCTCCTGCTCAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATTCTCCTGCTGAGTTGTTGGCGTATCAACGCCAGCTGGCCTTGAGTCAAGCTGCTGTATCCGGCCTTTCAGGTCAAGCTCTTCTGCAGATGTCTGGACAACATGGCCTAGCTCCTGCATCAATGGGTATAAACTCCGGGGGATCCCAAGCCATGTATGACGGATATGCTGGTAATTCATCAAGACAGCAGCTCATGTACTATCGCTAA 1311 0.4569 MQHRLKLQQQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPGGNLPPGFDTSSCRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGASTSSNEEKSTDNQNAVVLTNGSSDGGQDNSNEDAPENNPAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSGGSQAMYDGYAGNSSRQQLMYYR* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3301 436 SUPERFAMILY RNA-binding domain, RBD 136 246 IPR035979 GO:0003676
Amo18g3301 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Amo18g3301 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 331 IPR000504 GO:0003723
Amo18g3301 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Amo18g3301 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Amo18g3301 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 338 IPR000504 GO:0003723
Amo18g3301 436 Gene3D - 242 342 IPR012677 -
Amo18g3301 436 MobiDBLite consensus disorder prediction 220 262 - -
Amo18g3301 436 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 11 433 - -
Amo18g3301 436 Gene3D - 2 139 IPR012677 -
Amo18g3301 436 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 11 433 - -
Amo18g3301 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Amo18g3301 436 SMART rrm1_1 143 216 IPR000504 GO:0003723
Amo18g3301 436 SMART rrm1_1 265 334 IPR000504 GO:0003723
Amo18g3301 436 SMART rrm1_1 58 127 IPR000504 GO:0003723
Amo18g3301 436 CDD RRM2_PUB1 143 217 - -
Amo18g3301 436 Gene3D - 140 239 IPR012677 -
Amo18g3301 436 CDD RRM3_TIA1_like 264 338 - -
Amo18g3301 436 SUPERFAMILY RNA-binding domain, RBD 42 135 IPR035979 GO:0003676
Amo18g3301 436 SUPERFAMILY RNA-binding domain, RBD 254 347 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3301 Amo-Chr18 134286206 134293730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3301 58 338 Eukaryotic Initiation Factors Gene Family AT2G23350 29.795 1.60e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3301 K13201 - gmx:100777108 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1979 08 32024301 32031807 Amo18g3301 18 134286206 134293730 hybridization