Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3288 ATGGCTCAGAAAACAGAGAAAGAAGAAACGGAGTTCAAGGTTCCAGAAACCATTACCCCTTGCGTCAATAATTGTGGCTTAACAGGTAACCCAGCCACGAACAACATGTGCCAGAACTGCTTCAACGCCACCACCACCGCCGCCGCCGCTACCACAACTACTACAACAACAACACCGATCTCGCACCAGCCTTCTAGATTCTCCGATGAGAAAGCCACCGCAACAGCCAGATCTGCCACGTCAACKCGTTCGCCGAAGAGATCTCACCCGTCGAACGACGAGGAGAATCCGCGAGAGGSTAATTCGGGAACGGATCGGGGTGAAACGACGTCGTCCGAGGCGAAGCGTGTCGTGAATCGGTGCTCCGGTTGCCGTAGGAGAGTTGGTCTCACCGGATTCCGGTGCCGGTGCGGAGAGCTTTTCTGCGCAGAGCACCGGTACTCAGATCGCCATGACTGCACCTACGATTACAAAGCCGCGGGAAGGGAAGCCATCGCTAGAGAGAATCCGGTGGTTAAAGCCGCGAAGATCGTTAAGGTCTGA 543 0.5506 MAQKTEKEETEFKVPETITPCVNNCGLTGNPATNNMCQNCFNATTTAAAATTTTTTTTPISHQPSRFSDEKATATARSATSTRSPKRSHPSNDEENPREXNSGTDRGETTSSEAKRVVNRCSGCRRRVGLTGFRCRCGELFCAEHRYSDRHDCTYDYKAAGREAIARENPVVKAAKIVKV* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3288 180 MobiDBLite consensus disorder prediction 54 86 - -
Amo18g3288 180 Pfam A20-like zinc finger 20 42 IPR002653 GO:0003677|GO:0008270
Amo18g3288 180 ProSiteProfiles Zinc finger AN1-type profile. 115 161 IPR000058 GO:0008270
Amo18g3288 180 MobiDBLite consensus disorder prediction 54 111 - -
Amo18g3288 180 Gene3D - 1 92 - -
Amo18g3288 180 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Amo18g3288 180 Pfam AN1-like Zinc finger 121 158 IPR000058 GO:0008270
Amo18g3288 180 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 5 1 180 - -
Amo18g3288 180 SMART AN1_Zf_4 121 158 IPR000058 GO:0008270
Amo18g3288 180 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 180 - -
Amo18g3288 180 Gene3D - 104 166 IPR035896 -
Amo18g3288 180 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Amo18g3288 180 MobiDBLite consensus disorder prediction 87 102 - -
Amo18g3288 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 59 - -
Amo18g3288 180 SUPERFAMILY AN1-like Zinc finger 107 174 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3288 Amo-Chr18 134115167 134117060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3288 8 180 C2H2 Transcription Factor Family AT3G52800 38.150 8.81e-35 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3288 - - adu:107463072 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3288 18 134115167 134117060 Amo18g3288 18 134115167 134117060 ECH