Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3285 ATGACTCATAGTGCTGCTAAGGGAAAGTTTACTTGGGTTCGGAAGGCGGATACGAAAGTGTTGTCACCAACTGACAAACACACTAGTAGCTTACAACACAAGAATCAACATTCTCAAGGGACTCATTGTGAAGTTGGTGAATCGAGCACTGCTGCTATGCTGGATGAGAATTTGTTCTGTGAATTTGATGCGGCCAACTGCACCTCAGGGGATAAGTGTACCAAAATTCATGGAATCCTCTGCTTGTACTGCAGAAAGCCTTGTCTGCATCCAACCAATCTGAAACAAAGGTCGAACCACTTTAAGATATGCAAGGAAAAGGCTGAGATAATGAAGAATAGTCAAGATATAGAATGCAGTGTTTGCCTGGAGCGCGTTCTGCTGAAGCCTAGACCATCTCGGCGCAAGTTTGGTTTGCTATCTGAATGTGACCATCCTTTCTGTTTAGATTGCATCATCAGTTGGCGCAATTTGGCCCCAACCAATGCAATGGACTGCCCTGTGTGCCGCAAGCATTCATCTTTTTATGTTCAAAGTGACATTTGGTATGCTACAAAGGAAGAAAAACAGGCAATTATTGACAATTACAAGGCGAACTGCAAGTTGATTGATTGCAAGTATTTTAAATTTGGAACCAGGCAGTGCCCTTATGGAACTAGTTGTATGTATAAGCATGCTGTAAAACCTGTCTTGCGCGAACAGAGGCAAAACAGGCCACGACCTCAAATTGGAGGAGACAATCTCAACGAATATGACATCATGTCTCAGCTCAGTGAATTTGATTTGCATCCTCATGAGTTTTATTCTATCTTGAAAGACATGGAGTGGTTCGATGATATGAGTGCAATGGAGAAGATGGCTTTAGCTGATGAACTGGCTGGTCCTACTTACGGAGATTCACATTTCTTTCCTCAGGATGATTTCTTTGATAGTGATGATGATTTTGATGATGAAGAATTCGATCCTATTGATGCTGCAATATCATCAATGATGATGTCTGGTATGCCAGTATTTGGATTCAGTGATGACGAATACAGCGACAATGAAGCCAGGGATGGCAAAGACAGTGATGGCAAATCCATTGATGATGATTAA 1095 0.4201 MTHSAAKGKFTWVRKADTKVLSPTDKHTSSLQHKNQHSQGTHCEVGESSTAAMLDENLFCEFDAANCTSGDKCTKIHGILCLYCRKPCLHPTNLKQRSNHFKICKEKAEIMKNSQDIECSVCLERVLLKPRPSRRKFGLLSECDHPFCLDCIISWRNLAPTNAMDCPVCRKHSSFYVQSDIWYATKEEKQAIIDNYKANCKLIDCKYFKFGTRQCPYGTSCMYKHAVKPVLREQRQNRPRPQIGGDNLNEYDIMSQLSEFDLHPHEFYSILKDMEWFDDMSAMEKMALADELAGPTYGDSHFFPQDDFFDSDDDFDDEEFDPIDAAISSMMMSGMPVFGFSDDEYSDNEARDGKDSDGKSIDDD* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3285 364 MobiDBLite consensus disorder prediction 344 364 - -
Amo18g3285 364 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 5 351 - -
Amo18g3285 364 ProSiteProfiles Zinc finger RING-type profile. 119 170 IPR001841 -
Amo18g3285 364 SMART ring_2 119 169 IPR001841 -
Amo18g3285 364 SMART c3hfinal6 55 79 IPR000571 GO:0046872
Amo18g3285 364 SMART c3hfinal6 199 227 IPR000571 GO:0046872
Amo18g3285 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 191 IPR013083 -
Amo18g3285 364 ProSiteProfiles Zinc finger C3H1-type profile. 199 228 IPR000571 GO:0046872
Amo18g3285 364 ProSitePatterns Zinc finger RING-type signature. 143 152 IPR017907 -
Amo18g3285 364 MobiDBLite consensus disorder prediction 23 42 - -
Amo18g3285 364 MobiDBLite consensus disorder prediction 340 364 - -
Amo18g3285 364 Pfam Zinc finger, C3HC4 type (RING finger) 119 169 IPR018957 GO:0046872
Amo18g3285 364 MobiDBLite consensus disorder prediction 21 42 - -
Amo18g3285 364 SUPERFAMILY RING/U-box 112 176 - -
Amo18g3285 364 PANTHER MAKORIN-RELATED 5 351 IPR045072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3285 Amo-Chr18 133991556 133994380 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo18g3285 zf-C3HC4 7.8e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3285 K15687 - gmx:100788886 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3285 18 133991556 133994380 Amo18g3285 18 133991556 133994380 ECH