Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3269 ATGGCAAATCATGGCGTAGCATCCTTTGACTACACGTATGATGTTTTTCTGAGCTTTCGACGCGGAGTCCACCGCGCGTTCATTGATCATCTCTATAAAGCTTTGGACTGCATAGATATCAAAACCTTCAAAGACGACGACAAGGAAGAATCGACGACGGAAGAGGAAGAAACCAATCCGGATCTTATCGAGAAAATCGAAAGATCCAGAATATCAGTGYTSGTGCTGTGTAAAGACTTTCCATTTTCCACAAGGTGCCTCGATGAYGTTGCWAAGATCATGGAGTGTTATGAWAAAAAAACGATGCAGGTTGTGGGACTTTTCTATGACGGCGTGARAGCTGCAYATGTACGTTGGCAGAAGGAAGATAWGGCATATGGCAAAGCCATTACTCAACATAAAGAGAGATTGCGATTGGGAGAAGAATCGGACAAGATCAAAACATGGCGGTCTGCTTTGTCTAGAGTATGCGACCTCATTGCATTAAATTGCGATAAAAAGTATGAAACTGAGCTTATCAGTATGATTGTTAAAGGCGTCTCTGTTAGATTGCCTCCTTTGCGTTTACAAATGAAAGACGTAGTTGGATTAGATTCTCGTTTTGAGGAGGTGAAATCGCATCTAGATATAGGCAACAATGATGCGGTTCAAATGWTAGCAATTTGTGGACCTCCTGGCATAGGCAAAACCACATTTGCTGCGTATATTTATAACAACATTATTAACCACCAATATATTGCTGCAAGTTTTATSTCCAACATCAGAGATAAGCCAAAAGTGGAAGATCTCCAGTCGACGTTGTTGTCTGAGATGGGCGAGAATCGAGAGAGCAGGAAGGGCGATACAGATGGTGGAGGCAGAGAAATCAAACGCAAACTTAGTGTTAAAAAGGTTCTTTTAGTGTTGGATGGTGTTGATAAAATAGAACAGTTGAAATCWCTGGCTGGGGGGTGTGATTGGTTTGGTCCTGGCAGTAAAATTATTATAACAACAAGGGATGCAACTTTGTTGAATAGACATCGTGTTAAAATTAAGAGATATCAAATGACAGAGCTAAGTGATGATGACTCTCGCAAACTCTTTTGTTGGTATGCCTTCGATGYTYGCGAACCGGCACAAAACTTTGCAAATCTTGTTCCTCAAGCACTAAGTATTGCAAAGGGTATTCCTTTGGCCTTAAAAAAACTGGGCTCTAGATTGAAGGACCGTAGCTTAGACGAATGGGAAATGGAATTGGACAGATATAACAAGGTTCCAGAAGCTTTCGAATTTCTGCTCAAATCTTTCGGAAACTGA 1296 0.4082 MANHGVASFDYTYDVFLSFRRGVHRAFIDHLYKALDCIDIKTFKDDDKEESTTEEEETNPDLIEKIERSRISVXVLCKDFPFSTRCLDDVAKIMECYXKKTMQVVGLFYDGVXAAXVRWQKEDXAYGKAITQHKERLRLGEESDKIKTWRSALSRVCDLIALNCDKKYETELISMIVKGVSVRLPPLRLQMKDVVGLDSRFEEVKSHLDIGNNDAVQMXAICGPPGIGKTTFAAYIYNNIINHQYIAASFXSNIRDKPKVEDLQSTLLSEMGENRESRKGDTDGGGREIKRKLSVKKVLLVLDGVDKIEQLKSLAGGCDWFGPGSKIIITTRDATLLNRHRVKIKRYQMTELSDDDSRKLFCWYAFDXXEPAQNFANLVPQALSIAKGIPLALKKLGSRLKDRSLDEWEMELDRYNKVPEAFEFLLKSFGN* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3269 431 Pfam TIR domain 13 181 IPR000157 GO:0007165
Amo18g3269 431 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 420 - -
Amo18g3269 431 SMART till_3 12 159 IPR000157 GO:0007165
Amo18g3269 431 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 420 IPR044974 GO:0006952
Amo18g3269 431 ProSiteProfiles TIR domain profile. 11 184 IPR000157 GO:0007165
Amo18g3269 431 MobiDBLite consensus disorder prediction 272 287 - -
Amo18g3269 431 CDD AAA 221 308 - -
Amo18g3269 431 Gene3D - 10 184 IPR035897 -
Amo18g3269 431 Gene3D - 351 427 IPR042197 -
Amo18g3269 431 PRINTS Disease resistance protein signature 386 400 - -
Amo18g3269 431 PRINTS Disease resistance protein signature 218 233 - -
Amo18g3269 431 PRINTS Disease resistance protein signature 292 306 - -
Amo18g3269 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 419 IPR027417 -
Amo18g3269 431 Gene3D - 185 346 IPR027417 -
Amo18g3269 431 MobiDBLite consensus disorder prediction 268 287 - -
Amo18g3269 431 Pfam NB-ARC domain 200 411 IPR002182 GO:0043531
Amo18g3269 431 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 157 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3269 Amo-Chr18 133691948 133694187 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3269 195 422 WRKY Transcription Factor Family AT5G45050 29.004 6.23e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3269 - - adu:107462955 785.023