Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3268 ATGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATCGCATCTTTGGGTCAAGAAAGTGTACATGGCAAACATCTGGGATACAATGGTTGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCAGCAAATTAAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATTCTTCAGTCATGGAGATTACTATTGAGGATACTACAGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAAAATACTCTTAAGATGGAATGCAATTGTAAAGGTGATCTTGCACTTGCTCATCAAGACTGTGCAGCAAAGTGGTTTAGTATTAAGGGCAACAGGACTTGCGATGTCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTAAAAATTTATGATCGCAAACTCCCTGCCAGACAGCCACCAAATGTGCCACAACCAAGGGAAATAGCTTATTACCAAATGGTTCCTGAAGGAGAGAAGAAGAGATACTAG 609 0.4335 MVKVHSLHCQRLPTHYRLLQSHLWVKKVYMANIWDTMVVKQHITRSLSVPVDAKASKLRCTQSRVLIRIISARRHLATVDGTSTGDSSVMEITIEDTTADIPEEEAVCRICLAELGEGENTLKMECNCKGDLALAHQDCAAKWFSIKGNRTCDVCKQDVQNLPVTLLKIYDRKLPARQPPNVPQPREIAYYQMVPEGEKKRY* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3268 202 SUPERFAMILY RING/U-box 104 159 - -
Amo18g3268 202 Pfam RING-variant domain 108 155 IPR011016 GO:0008270
Amo18g3268 202 SMART ringv_2 107 156 IPR011016 GO:0008270
Amo18g3268 202 ProSiteProfiles Zinc finger RING-CH-type profile. 100 162 IPR011016 GO:0008270
Amo18g3268 202 PANTHER OS02G0165000 PROTEIN 36 192 - -
Amo18g3268 202 CDD RING_CH-C4HC3_MARCH 108 156 - -
Amo18g3268 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 163 IPR013083 -
Amo18g3268 202 PANTHER OS02G0165000 PROTEIN 36 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3268 Amo-Chr18 133674197 133675436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3268 91 162 C3H Transcription Factor Family AT2G37950 43.836 1.12e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3268 - - aip:110265370 341.273