Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3263 ATGGCCACGCTTAGTATTTCAAATAGTGCAACCCATGGAGTTGATCGTGTGGCAGACATCAACCCGTCTAAACTAGAATGGTCCGTGGTGGTGGGCGTTGTTCGACTGTACGAGGTTCCGAGTCAGTGGAATCCGGATGAAGCTTTTAGCATCGAGATGATCCTTCAGGATGAACGGGGTGATCGGATCCATTGTAGTGTACCGAGGAACAGCATTGTGATATTTAGGAGTGTTATCCGCGAGCATGAAATCTATTCCATGAAGAACTTCATTGTGCAAGGCTATGGAAAGTCAGTGAGGACTACACCTCACAAATATAAACTAAGTTTTTATATGAAAACGTCTGTGTCTAGACTCACCCCTGACACATTTGTTTTCAACCCGTTTCGATTCACAAAGTATGAAGAAATTGAGGCARTGGCTTCAGTTGTCGCTCAAAACCACTTGATCGATTGCATTGGTCATGTGGTAGCTAAAGAAGATGCAAGAGATTTGGTTACCAAAACTGGGCAACACACTAAACGCATGGTGGTTTACTTGGAGGATTTAGAGTTTGTTTTCTTGATTCTCCTTTTGGGACATAAGATGAAGTGTACTCTATTTGGCACCTTTGTTGATGAAGTGGTTACATTCTTGCATAGGCCAGATTGTGAGCCATTAGTTATGGTTGCCCAGCTTTTTAAACCATATGTATATTTGAATGATGTTAACATCCAAAGTAGCTTTGACCCTTCTCGAGTATATTGTAATGCTGACTTCCCTGCTGTTATTAGTTTCAAGAAGAGTTTACTTGAGCAAGGTGATCTAGCTTCTCAGAGAATCAATCTTATCGAGAGTCATGGCCAACCTTCCGTCTCTGATGAAATATCTCGAGGAACAATTCCAATCAAGTCAATGGAAGAAGTTCTCAACTTGGACCATGAGACATCATGTTGGGTTGTTGGTACCATAGTTTCTGTYGATGTGGGTTTGAAGGATTGGTTCTACGTATCGTGCAACACATGTCCCAGAAAAGTGCAGCCAAATAAGGACCGCTATTGGTGTGATCATTGTAGAAAGGTTGGGTTTAATGGTGCTCTGAGATATCGTCTTGCTGTCATCCTTACTGATGGTACCGGTTGTATTAAGGTGACCTTATGGAATTCAGAAGCCAAGACTATTGTTGGCAAATCAGCCAGTGAAATACGTGATCCGACTGATACATACCCGGGAAGTTCGTATCCGAAAGCTTTCGATGCGATTGTTGAAAGGAAGTATTTGTTTAAATTGTCTGTGACGTATCGGAATATCAGGTCGGTTGACCAGCCTTACAATGTAGTTAAGATAAGTGATGATGAGTCGCTGATAGGCCTTTATTCGACGGAATCTTCGACTTCCGTTAATATTGGGGCAAGGGTTCACAGTTTTACAACCAGTTTGGGTGGTGGTTCTCATGAAGGGGATCAAAGTTTTAGTGCCACTTTGGATGGTTCTTGCCAATTGGAAACTGAATCAGAAGCAAATGCGTTGGGTTTTATATCTGCATTGAAGGACTCCCCAACTGAAAGCAAATGTGAAAGCGTCCATGCCAGTCCCGTTAAGTCGGTGGTCGGTGAGGTTGTTGACAATGCTATCACGGTAGGGATATGTACTCCAGATGGTCAAGGTTCCAGCAACAAGACATTTAAAAGAAACACTGGAAAGAGGAAGCTAGAGTAA 1698 0.4252 MATLSISNSATHGVDRVADINPSKLEWSVVVGVVRLYEVPSQWNPDEAFSIEMILQDERGDRIHCSVPRNSIVIFRSVIREHEIYSMKNFIVQGYGKSVRTTPHKYKLSFYMKTSVSRLTPDTFVFNPFRFTKYEEIEAXASVVAQNHLIDCIGHVVAKEDARDLVTKTGQHTKRMVVYLEDLEFVFLILLLGHKMKCTLFGTFVDEVVTFLHRPDCEPLVMVAQLFKPYVYLNDVNIQSSFDPSRVYCNADFPAVISFKKSLLEQGDLASQRINLIESHGQPSVSDEISRGTIPIKSMEEVLNLDHETSCWVVGTIVSVDVGLKDWFYVSCNTCPRKVQPNKDRYWCDHCRKVGFNGALRYRLAVILTDGTGCIKVTLWNSEAKTIVGKSASEIRDPTDTYPGSSYPKAFDAIVERKYLFKLSVTYRNIRSVDQPYNVVKISDDESLIGLYSTESSTSVNIGARVHSFTTSLGGGSHEGDQSFSATLDGSCQLETESEANALGFISALKDSPTESKCESVHASPVKSVVGEVVDNAITVGICTPDGQGSSNKTFKRNTGKRKLE* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3263 565 Gene3D - 13 118 IPR012340 -
Amo18g3263 565 Gene3D - 281 448 IPR012340 -
Amo18g3263 565 Pfam Replication factor-A C terminal domain 326 429 IPR013955 -
Amo18g3263 565 PANTHER REPLICATION FACTOR A 1, RFA1 318 468 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo18g3263 565 PANTHER REPLICATION FACTOR A 1, RFA1 30 180 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo18g3263 565 Gene3D - 126 272 IPR012340 -
Amo18g3263 565 PANTHER BNAC01G35430D PROTEIN 318 468 - -
Amo18g3263 565 PANTHER BNAC01G35430D PROTEIN 30 180 - -
Amo18g3263 565 SUPERFAMILY Nucleic acid-binding proteins 129 264 IPR012340 -
Amo18g3263 565 SUPERFAMILY Nucleic acid-binding proteins 295 444 IPR012340 -
Amo18g3263 565 CDD RPA1_DBD_A_like 28 116 - -
Amo18g3263 565 CDD RPA1_DBD_C 296 445 IPR013955 -
Amo18g3263 565 Pfam Domain of unknown function DUF223 52 135 IPR003871 -
Amo18g3263 565 SUPERFAMILY Nucleic acid-binding proteins 15 123 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3263 Amo-Chr18 133558994 133561588 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3263 11 432 Core DNA Replication Machinery Family AT5G08020 21.769 8.20e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3263 - - ahf:112695129 1115.14