Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3245 ATGGGTTCTGTGAGTAACACAAATCCATGGGTGGCTCCAAATTCAGTTTTGAAGGACTGTTCCCAAGGGATTTGCAGCATGTATTGTCCTCAATGGTGCTACATCATGTACTCGCCTCCACCACCGTCAATCGTTCTCGGGGACGGTTCAGATGACGATGATTCTTCCTCCGGCTTCCAATTCTCTCCCCTTATAGTCGCAGTGATTGGAATCTTGGCAAGTACTTTCATCTTGGTCACTTACTACACCGTCATCTCAAGGTTCTGCAGGAACAGAGGAAGAGTTAACGATCAAGCAAATCATAGCAATGATGATACTGTTAATAACAATGAACCTTCTCAGGTTGCTGCGACTTCCGGCATGGACGAGGCTCAGATCAAATCGATAACCGTCTGTAAGTACATCAAGAACGGTGGGTTGGTTGAGGGAAGTGACTGTTCCGTTTGTTTATCAGAGTTTCAAGAGAATGAGAGTTTGAGATTGTTGCCCAAATGTAACCACGCTTTTCATCTTCCTTGTATTGATACTTGGCTTAAATCACAAGCTAGTTGTCCCTTGTGCCGCTCCAATATTGTTTTCTWTAATAATAACTCCAATCCWAGTCACTCTGACTCGGCATTGACACAGATTCCACATCCRCCACCGGCAACTGTCAGTGTCAATTCCTTGGAATATCAGCAGAGGAGTGATGATGTTGTTGCAATAATTGTTCAGAGTTCACAGCATCAGCAAGTAAAATGGCCCAACGTTGAAAGTGCTACTAATTTGGATCAAAGAAGATTATCCGTTGCTGACATTTTGAATCAAAATGATGAAGCTGATCCGGTAAAGAACCTAAGGTGCGCCGTCATCGCCACCCCGCCCAAAATGGAGACGTTGTTCCGTTGCTGTCCAACAATGCACCTTTGCCTCTCTCCTACACGTCGCATCTCCATCTCTGCTGAACTCGCGAAACGCCGTCGCTCCGTTGTCGTGCTAGAATCTTTGTGCCGTTGCGACCTAACCGCGCTGGAATCTTTGTGCTGTCATTACCTAACCGCGCCGGAGTCTTTGTCTTGTCGCATCTCTGGCCTTGCCTCCAACCTGCCGTTAGATGGTTCTTTTATATGA 1110 0.4604 MGSVSNTNPWVAPNSVLKDCSQGICSMYCPQWCYIMYSPPPPSIVLGDGSDDDDSSSGFQFSPLIVAVIGILASTFILVTYYTVISRFCRNRGRVNDQANHSNDDTVNNNEPSQVAATSGMDEAQIKSITVCKYIKNGGLVEGSDCSVCLSEFQENESLRLLPKCNHAFHLPCIDTWLKSQASCPLCRSNIVFXNNNSNPSHSDSALTQIPHPPPATVSVNSLEYQQRSDDVVAIIVQSSQHQQVKWPNVESATNLDQRRLSVADILNQNDEADPVKNLRCAVIATPPKMETLFRCCPTMHLCLSPTRRISISAELAKRRRSVVVLESLCRCDLTALESLCCHYLTAPESLSCRISGLASNLPLDGSFI* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3245 369 Pfam Ring finger domain 145 188 IPR001841 -
Amo18g3245 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 3 271 - -
Amo18g3245 369 SMART ring_2 146 187 IPR001841 -
Amo18g3245 369 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Amo18g3245 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 196 IPR013083 -
Amo18g3245 369 CDD RING-H2_PA-TM-RING 145 188 - -
Amo18g3245 369 SUPERFAMILY RING/U-box 140 198 - -
Amo18g3245 369 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 271 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3245 Amo-Chr18 133232662 133234641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3245 1 192 C3H Transcription Factor Family AT3G03550 53.333 1.51e-64 207