Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3236 ATGCCAGGAAAACCCGAATCAGACGAATGGCGGGCGAAGCGAAGCCAGCAGATTCAGTTTCAAGCTTCCATTTATGCTCAGCCCTGGTGGCGCGGCGGAGCCGGTGAGAATGCTCCAAAATCATCATCAGTAGATCAGCAGTTGAATGGTTCATCAGCCATGAATGGTGGCACAGTCACAACACAATCAGAGACTAATGAAGTTGTTGGTTTCAATAAACAGATGCAGTCTTTGATTTCTCAATCACTACCTGGAATTGATAACTCAGGTGGAGATGTTACCAAAGAGCACCAGAACATCAAACATGCTTTTTCCTCAACCCCATTTACCATGGGAAAACACCTTGGTCCGAATTCCGAGACTGAAAGCATTGGTCATTCAATTGTTTTAACTTCACAAGCTTATTTTGATGCACATTATGGTGGAGGCTTGACACCCTATGGGCAACAAACTATGATAAACCCTCAGCTGTATGGGATGAACCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAGCCGGTTTATGTCAATGCAAAGCAGTATCATGGTATTCTGAGAAGAAGACAGTCACGTGCTAAGGCCGAGCTCGAAAAGAAAGTGATTAAAGTTAGAAAGCCATATCTTCATGAGTCGCGTCACCTTCATGCTATGAGAAGGGCAAGGGGTAATGGTGGTCGCTTTCTTAATACAAAGAAGCTTGAAGGCAACAACAACAGTGTAAACCCCTCAATGGAATCCGGAAGCTCGCTTTCCGCGGCTCCTTTACATTCCAACAATGATCACTATGTTGTGTCGCAGTCCATGGTTCAGACATGGAGAAAATGCAGAATTTCACCATTGGTTTCTATGGTAGCAATGGTCTGTCCTCAATGTACCATTCACAGTTTAATGGAAGAAATGAGGGACATTGCTTTGGTGGAGAAAGGCAAGGCATGCTTATGCATGGAGCCCCAAATGGGGCTATTGAATGACACTCCCCCCAAGTTGGTGGTTCCCTCGCACATGGACTCTAAAGATGAAGTTGGTGAGCTTTGTCTCATCCAACTTTGGAGGAGACCACCGTTACAATAG 1077 0.4503 MPGKPESDEWRAKRSQQIQFQASIYAQPWWRGGAGENAPKSSSVDQQLNGSSAMNGGTVTTQSETNEVVGFNKQMQSLISQSLPGIDNSGGDVTKEHQNIKHAFSSTPFTMGKHLGPNSETESIGHSIVLTSQAYFDAHYGGGLTPYGQQTMINPQLYGMNHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHAMRRARGNGGRFLNTKKLEGNNNSVNPSMESGSSLSAAPLHSNNDHYVVSQSMVQTWRKCRISPLVSMVAMVCPQCTIHSLMEEMRDIALVEKGKACLCMEPQMGLLNDTPPKLVVPSHMDSKDEVGELCLIQLWRRPPLQ* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3236 358 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 229 IPR001289 GO:0003700|GO:0006355
Amo18g3236 358 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Amo18g3236 358 MobiDBLite consensus disorder prediction 232 252 - -
Amo18g3236 358 Gene3D - 172 233 - -
Amo18g3236 358 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 55 262 IPR001289 GO:0003700|GO:0006355
Amo18g3236 358 MobiDBLite consensus disorder prediction 39 59 - -
Amo18g3236 358 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Amo18g3236 358 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Amo18g3236 358 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Amo18g3236 358 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 55 262 - -
Amo18g3236 358 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Amo18g3236 358 MobiDBLite consensus disorder prediction 227 252 - -
Amo18g3236 358 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3236 Amo-Chr18 133142748 133148387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3236 21 255 CCAAT-HAP2 Transcription Factor Family AT5G12840 39.024 1.33e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo18g3236 CBFB_NFYA 3.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3236 K08064 - gmx:100782085 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3236 18 133142748 133148387 Amo18g3236 18 133142748 133148387 ECH