Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3234 ATGGAAACGAGTCCCGGCCGTACGATTAAGCTCCTCTGCAGCTACGGCGGCAAGAACCTCCCACGCGCTACCGACGGCGGGCTCCGTTTCATCGGTGGCCACACCAGAGTCACCGTGGACCACTTGTTGGTAAAGGTAGGAGCGTTGTGCGGTTCATCTGTGACGTTCTGGTGTCAATTGCCGAACGAAGACTTAGAAACCTTGATCTCCCTCACCAATGACGAAGATCTGACGAACATAAGCAAAGAATATGACCGCGCTTCGTCGAAACTACCTCATCCGTTGAATACCAGAGCCTGTCACTCAGAACTTACACTTTTGGATACGGAACAGATCATAAAACGAGGCCGCATACGAACGTACCTTACGGGTGAAAGATTTGTCGCGAGTGTGACGATTACAACGTATACCCATGACTCATCCCACAACACCCGAGTAACGTTATCATATACGCATCCGTAA 462 0.5065 METSPGRTIKLLCSYGGKNLPRATDGGLRFIGGHTRVTVDHLLVKVGALCGSSVTFWCQLPNEDLETLISLTNDEDLTNISKEYDRASSKLPHPLNTRACHSELTLLDTEQIIKRGRIRTYLTGERFVASVTITTYTHDSSHNTRVTLSYTHP* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3234 153 SUPERFAMILY CAD & PB1 domains 25 89 - -
Amo18g3234 153 PANTHER OS05G0427100 PROTEIN-RELATED 1 102 - -
Amo18g3234 153 PANTHER PB1 DOMAIN PROTEIN 1 102 - -
Amo18g3234 153 Pfam PB1 domain 35 90 IPR000270 GO:0005515
Amo18g3234 153 SMART PB1_new 23 95 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3234 Amo-Chr18 133107587 133109027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3234 9 90 MAP Kinase Kinase Kinase AT1G04700 47.191 1.39e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3234 - - aip:107611558 176.792