Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3227 ATGTACATTAAGGAGGTTTGCTTGGAAGGTTTCAAATCATATGCGACGCGAACCGTTGTTCCGGGTTTCGATCCGTTCTTCAATGCCATAACGGGCCTGAACGGTTCCGGCAAATCGAACATTCTCGATTCGATTTGCTTCGTGCTGGGTATCACCAATTTGCAGCAGGTTCGAGCTTCGAACCTCCAGGAGCTTGTTTACAAGCAGGGACAAGCGGGGATTACGAAGGCGACGGTTTCAATTGTTTTCGACAACTCTGATAGGAGTCGAAGCCCTCTCGGATATGAAGACCATTCTGAGATTACAGTAACAAGACAGATAGTAGTTGGAGGGAGGAATAAGTATTTGATCAATGGGAAGCTTGCACAGCCTAGTCAAGTCCAGAATCTTTTTCATTCGGTGCAGCTAAATGTTAATAATCCACATTTTCTCATAATGCAAGGGCGCATCACTAAGGTTTTAAATATGAAGCCACCAGAGATATTGTCTATGCTTGAGGAAGCTGCAGGGACGAGAATGTATGAGACCAAGAAAGAGGCTGCTCTAAAAACACTTGAYAAGAAGCAAAGTAAGGTTGARGAGATTAACAAGCTTCTTGATCAGGAGATATTGCCTGCATTGGAGAAGTTGAGAAAAGAAAGGATGCAGTATATGCAATGGGCTAATGGCAATGCTGATTTAGATAGGCTTAGAAGATTTTGTATTGCTTATGAGTTTGTTCAAGCAGAGAGGATTAAAGACAATGCTAGATCTGAGGTGGAACAAGCAAAATCAAAGATAACCGAGATTGATGAAAGTGCTAAGAAGGCTCAGGTAGAAATAAAGGAAATGGAAACAAAAATAGCTCAGTTGACTTCTGAAAAAGAGGCAAGAATGGGTGGAGAAGTGAAATCTCTCTCAGATAAAGTAGATGCACTTTCTCAGAGTCTTGTCAAGCAAACATCTGTGTTAAATAATAAGAAAGACACTCTCCGAAGTGAAGAAACCAACAAGGATAATATTGAGAAAAATATTGAAGAACTGAAGCAATCTGTAGAAGAGAAGGCCAATGCTGTTAAAAAAGCTGAAGAGGGAGCTGCAGATCTTAAAAAGAGGGTCGATGAGCTTACTAAGAYGCTGGATGAGCATGAGAAAGAATATCAGGGTGTTATAGCTGGCAAGAGCAGTGGGAATGAAGAGCAATGCTTAGAGGATCAACTAGCTGATGCAAAGATAGCAGTTGGGAGTGCTGAAACAGAACTGAAACAGTTGAAAACCAAAATTAGCCATTGTGAAAAGGAACTGAAAGAGAAAACTAAACAATTAAGGTCAAAGCGTGAAGAAGCTGTTTCTGTAGAAAATGAGCTTGCCGCTAGAAGAAAAGACGTGGAAAATGTTAAGATCGAATTGGAGTCTATTCCATATAAAGAAGGAGAGATGGAAGCTCTGCAAAGGGATCGTGCATCTGAGATGGATTGTGTACAAAAGTGGAAGGATGAAATACGCAATATTTCGGCATACTTGTCAAATGTTGAATTCACGTATTGTGATCCTGTCAAAAACTTTGATAGATCAAAGGTGAAAGGTGTCGTTGCAAAACTCATCAAAGTAAAGGATAAGTCCACAATGACTGCCTTAGAGGTTACAGCAGGTGGAAAGTTGTTTAATGTTGTTGTTGACACAGAAGATACTGGAAAGCAGCTACTACAGAATGGCAAACTTAGAAGAAGAGTGACAATCATACCCTTGAACAAAATACAATCCTATAGTGTTCCCGCTAGAGTTCAACAAGAGGCCGCTAGATTGGTGGGGAAAGAGAATGCTGAAATAGCACTTTCTTTGGTTGGTTATGAAGAAGAATTGAAGAGAGCAATGGAGTACGTTTTTGGTTCAACTTTTGTTTGCAAGACCATGGAAGCTGCAAAGGAGGTGGCATTTAATCGGAATATTCATACAACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCAAGTGGCCTTTTGACTGGTGGAAGCCGAAGGGGTAGTGGTGATCTTTTGAAGCAACTACATGATTTGGCTGAGGCTGAGTCAAAACTTTCAGTGCACCAAAGAAGGTTATCGGAGATTGAAGAAAAGATTACAAAGCTTCTCCCTCTTCAGAAAAAATTTAAAGACCTCAAAGCACAACTAGAACTTAAATCATATGATCTTTCATTATTTCAGAGCAGAGCTGAGCAGAATGAACATCATAAGCTTGGGGAGTTGGTGAAGAAGCTTGAGCAAGAACTTGAGGAAGCAAAAGTTGCAGTAAAAGAAAAACAACTTTTTTATGAAGAATGTGTCAAGACTGTTTCATCCCTTGAGAAATCAATCAAAGAACATAACAGTAGTCGAGAGGGTAGGCTGAAGGAATTAGAGAAAAAGATKAAGTCAATCAAATCCCAAGTGCAATCTTCTTTAAAAGACCTGAAGGGACACGATAATGAAAAGGAGAGACTTGTGATGGAAATGGAAGCTGTTATSAAGGAGCAAACATCCTTGGAGAATCAACTAGCTTCTTTGATAACACAGATCAGTAATCTTYCATCAGAAGTAGAAGAGCAAAGTTCTGCAGTTGATTCTGCAAGGAATGATCTTGATCAAGTTCAGTCACAGCTGAACTCAGTTCGCCTGAAAATGAAGGAATGTGACAAGGAAATCAGTGGTATTATGAAGGAYCAGAAAAAAATTGAAGATAAACTTAGTGAGAGTAATCTTGAAAGGAAAAGGATAGAAAATGAGGTAAAACGGATGGAGATGGAACAGAAAGACTGCTCTGTGAGAGTGGATAAATTGTTAGAGAAGCATGCTTGGATTGCTTCTGAAAAACAGTTGTTTGGTAGAAGTGGAACTGATTATGATTTTTCTTCCCGTGATCCTGGTAAAGCAAAAGATGAACTTGAAAAGCTTCAAGCTGAACAGTCTGGGCTTGAGAAACGGGTCAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAAGACGAGTACAATGATTTAATGTCAAAGAAAAACATAATCGAGAATGACAAGTCTAAAATCAAGAAAGTGATCGAAGAGTTGGATGAGAAAAAGAAGGAGACGCTAAATGTGACCTGGGTCAAAGTAAACACTGATTTTGGATCCATATTTTCTACACTACTACCGGGTACAATGGCTAAGTTAGAACCTCCAGAAGGATGCAGTTTTCTTGATGGTCTTGAGGTTCGGGTTGCATTTGGAGGTGTTTGGAAACAGTCATTGTCTGAATTAAGTGGAGGTCAGCGATCTCTGCTGGCACTTTCTCTGATTCTGGCACTGCTTCTATTCAAACCTGCTCCACTATACATCCTTGATGAGGTTGATGCGGCTCTTGATTTAAGCCACACACAGAACATCGGGAGAATGATAAAGACTCATTTTCCACACTCCCAGTTTATTGTTGTTTCACTGAAGGAAGGAATGTTTAATAACGCAAATGTTCTTTTCCGGACAAAATTTGTCGATGGTGTTTCAACAGTCCAGCGAACTGTTGCTGCTAAGCAAAGCAAGTGA 3531 0.3993 MYIKEVCLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLDKKQSKVEEINKLLDQEILPALEKLRKERMQYMQWANGNADLDRLRRFCIAYEFVQAERIKDNARSEVEQAKSKITEIDESAKKAQVEIKEMETKIAQLTSEKEARMGGEVKSLSDKVDALSQSLVKQTSVLNNKKDTLRSEETNKDNIEKNIEELKQSVEEKANAVKKAEEGAADLKKRVDELTKXLDEHEKEYQGVIAGKSSGNEEQCLEDQLADAKIAVGSAETELKQLKTKISHCEKELKEKTKQLRSKREEAVSVENELAARRKDVENVKIELESIPYKEGEMEALQRDRASEMDCVQKWKDEIRNISAYLSNVEFTYCDPVKNFDRSKVKGVVAKLIKVKDKSTMTALEVTAGGKLFNVVVDTEDTGKQLLQNGKLRRRVTIIPLNKIQSYSVPARVQQEAARLVGKENAEIALSLVGYEEELKRAMEYVFGSTFVCKTMEAAKEVAFNRNIHTTSVTLEGDIFQPSGLLTGGSRRGSGDLLKQLHDLAEAESKLSVHQRRLSEIEEKITKLLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGELVKKLEQELEEAKVAVKEKQLFYEECVKTVSSLEKSIKEHNSSREGRLKELEKKXKSIKSQVQSSLKDLKGHDNEKERLVMEMEAVXKEQTSLENQLASLITQISNLXSEVEEQSSAVDSARNDLDQVQSQLNSVRLKMKECDKEISGIMKDQKKIEDKLSESNLERKRIENEVKRMEMEQKDCSVRVDKLLEKHAWIASEKQLFGRSGTDYDFSSRDPGKAKDELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWVKVNTDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQSK* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3227 1176 Coils Coil 178 198 - -
Amo18g3227 1176 Coils Coil 400 448 - -
Amo18g3227 1176 Coils Coil 982 1026 - -
Amo18g3227 1176 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 1174 - -
Amo18g3227 1176 Coils Coil 317 371 - -
Amo18g3227 1176 SUPERFAMILY Smc hinge domain 488 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Amo18g3227 1176 Coils Coil 894 928 - -
Amo18g3227 1176 Coils Coil 829 848 - -
Amo18g3227 1176 Coils Coil 373 386 - -
Amo18g3227 1176 Coils Coil 850 886 - -
Amo18g3227 1176 Coils Coil 679 699 - -
Amo18g3227 1176 Gene3D - 995 1175 IPR027417 -
Amo18g3227 1176 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
Amo18g3227 1176 Coils Coil 782 795 - -
Amo18g3227 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1157 IPR027417 -
Amo18g3227 1176 Coils Coil 797 827 - -
Amo18g3227 1176 Gene3D - 800 892 - -
Amo18g3227 1176 Coils Coil 239 287 - -
Amo18g3227 1176 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 1174 - -
Amo18g3227 1176 Gene3D - 518 678 - -
Amo18g3227 1176 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Amo18g3227 1176 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Amo18g3227 1176 Coils Coil 729 763 - -
Amo18g3227 1176 Gene3D - 1 202 IPR027417 -
Amo18g3227 1176 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Amo18g3227 1176 Gene3D - 577 667 - -
Amo18g3227 1176 SUPERFAMILY Tropomyosin 300 478 - -
Amo18g3227 1176 PIRSF SMC 1 1156 IPR024704 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3227 Amo-Chr18 133024072 133035797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3227 3 170 Structural Maintenance of Chromosomes family AT5G15920 22.619 4.97e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3227 K06674 - gmx:100788674 1927.91