Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3197 ATGAGGAAGAAGCTCGATACCCGATTCCCTGCGGCTCGGATAAAGAAGATAATGCAAGCAGATGAAGATGTTGGAAAGATAGCACTTGCAGTTCCTGTTTTAGTCTCTAAAGCTTTGGAGCTATTTTTGCAAGATCTATGTGACCGCACGTATGAAATAACTCTTCAGAGAGGAGCAAAGACCATGAACTCATTGCATTTAAAACATTGCGTACAAAGCTACAATGTCTTTGATTTTCTGAGGGATGTTGTCAGTAGGGTTCCTGACTACGGCCATGGCCATGGCCATACAGAAGCTGGATCCGATGATCGGGTCATTTACAAAAGAAGGAAGGCTGCTACTGATGATTGTAACGACAGTGATGAAGAGGCTAAGAGGAGCAAAATGCATGAGTTAGGCCACACTGGTAGTACTGGAAGGGGAAGGGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGAGCTAGAACTGCAGAAAGAGAGGCATATCGTCCGGAACCTGAAATTGAGCCTCGTGCTTCTATTCCGGAGAGCAGTCAACATAATAGTAGCACACCTGCGGCAATATTTGATGGTTCACAGTCTGAGGACTTACCAAAGGAGAATATCGCTGCCGTCGCTACTGAAAGCTTCGAGGCACTCCCAAATGCTGTTCCCAGTTCTGACACAAACCAAAACCTGGACAAAAACGATAGCACAGCAGCAGCAATTGGTGCCTCATTACCTGAACCTGAAAAAGAGAGCAAGCACGAGGAAATTCCGGGCTGGTCCCTTTCTGACGTGGACAAGATGGCCATCGACTCAATGCAGCTTGCGCAGCTCGGTGGTCAACTAGAAGTTGATGAAGAAGATTATGACGAGGAAGGGTAA 867 0.474 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHTEAGSDDRVIYKRRKAATDDCNDSDEEAKRSKMHELGHTGSTGRGRGRGRGRGRGRGARTAEREAYRPEPEIEPRASIPESSQHNSSTPAAIFDGSQSEDLPKENIAAVATESFEALPNAVPSSDTNQNLDKNDSTAAAIGASLPEPEKESKHEEIPGWSLSDVDKMAIDSMQLAQLGGQLEVDEEDYDEEG* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3197 288 MobiDBLite consensus disorder prediction 113 260 - -
Amo18g3197 288 PANTHER HISTONE SUPERFAMILY PROTEIN 1 287 - -
Amo18g3197 288 MobiDBLite consensus disorder prediction 151 170 - -
Amo18g3197 288 MobiDBLite consensus disorder prediction 174 190 - -
Amo18g3197 288 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Amo18g3197 288 MobiDBLite consensus disorder prediction 113 137 - -
Amo18g3197 288 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 287 - -
Amo18g3197 288 MobiDBLite consensus disorder prediction 242 256 - -
Amo18g3197 288 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Amo18g3197 288 SUPERFAMILY Histone-fold 4 97 IPR009072 GO:0046982
Amo18g3197 288 MobiDBLite consensus disorder prediction 213 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3197 Amo-Chr18 132286494 132289940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3197 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.056 3.67e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo18g3197 CBFD_NFYB_HMF 2.2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3197 K21752 - gmx:100814712 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3197 18 132286494 132289940 Amo18g3197 18 132286494 132289940 ECH