Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3110 ATGGCTTTTTCCAATCTTGGCTTCCTCTTTATCCTTATCATCTTTGTCCATGTTGATGCAGATGACTTTCACTCGTCAGGGTCCTATTGCTCATCACTTAACAAAACCACCCCTAACAGTCCTTTCCAGTTGAACCTAAAGACCCTTTTCAAGTACCTATCTTCCAATGCCACCACGGGCAACAAGGAATTTTACAGCACCAAAGTCCTTGGCACAAACCACTTTGATACAATATATGGACTCTACTTGTGCAGGGGTGACCTCCCTTCTCAACTTTGTGGAAAGTGCATCTCAGAAGCAACCCATAGCTACTTGTTCCCAGACCCAAACCAAGGAATATTCGATTGCTCCTCATCCAGAGAGGGAGGAATTTCGTATGACGAGTGCATGGTTCAATATTCCAATAACTTCACTTACTTCTCGGCAGTCGACTTAACGCCTTCTAGTAGTTCTTGCTTGTCAAGCAATATGTCTGCAACCTTCATGAATTTAGTGTTTGACACTCTGAACAAAATTGCAGATAAAGCATCTCAAGGTTCTACAGAGAAGTATGCTACAAAACAAGTAAGAATATCTGGATTTCGGTCCCTATACTCTTTGGCTCAGTGTACACCAAACCTGTCATCTCAAGATTGTAGAACCTGTTTAGGCAACATGATAAAACAAGTTAAACAAGAGTGCGGTGGAAACGAAGCAACAAGTTCCAGCCGCAGCTGCAACTTGAAGTATGCTATGTACCCTTTCTATCGTGAAAGTAAAAGCCTGGCACCAGTAGGACTCATTCCTATAACAAATCTGTCAAATGATTTTGGCTATCTTTCCCACAACTGTTCAACTTCAACCAACGAAACCATCATCAAGAACAGTCAATTTGAATCTAACCTCAGGAACCTCCTCTCTTCCTTGTCTTCTAATGCCACCAACAAAATTGGCTTCTACAAGACCACCATTGGTGGCGGAGAAAGCCCCTCTGACACGGTTACCGGTCTCTTCATGTGCCGTGGCGATGTGTCCCTTAGTCTCTGTCAACTCTGTGTCCAAACCGCTGCTAAACGAATACATTCAGAGTGTAGTTCATCCAAGGAAGCCATCATTTGGTACACTCATTGCCTTCTTCGCTACTCCTATCGATCTCCCCTCTCCACCTGGAACGACACGAGTCCCATGTTTCATGAGTTCAACATTGCCAACACCTCCAACCTTAACCGAGAGCAACAGAACTCCTTCACTCTCACACTAGTGAGCACTTTATCTGACATAACGAATATGAAGGAGGAGAGCACCACCAAGAATTATGTAACTGCAACCGCAAAACTGAATGGTGTCCAAACTCTATATGCTCTCGGCCAATGTACACCGGATCTAAATAGTGGAGATTGCAGCTCTTGCTTACAGAACATTTTCCTATATGAAATTCCATGGTGTTGTTTGTCAAGTCCAGAGGGAAAAGTTTTTTATCCTAGCTGCTATATCATGTTTGGATTGTCCAAATTTCATGGAGATGATGATCGAGTCCAGACACCTAGTCAGGCTAGTCTTCCTCCAGGAGCTACAGGAGGAAAGAGAAATGGTAGGTATCAGAAAAAAATTCTGTTGATTGTTGTTCCCACTATTGTTGCTGGGATGCTCTTCTTATGTTCTGGCTGGCATTTGTTAAGAAGAAAAGAAAGCAAGAAATACAAAACTATTCTCAGAGAAAATATTTTTGGTGATGAAGGTAGTACTTTGGAGCCATTGCAAATGGATCTGGCTATAATTGAGGCAGCAACAAATAACTTTTCAACTGAGAACTTGATTGGGAAAGGTGGATTTGGAAATGTTTATAAGGGTATTCTTTCTGATGGGAGACATGTAGCTGTAAAAAGATTATCAAAAATTTCTAAACAAGGCATTAAGGAGTTCAAGAATGAGGTGTTGTTGATAGCTAAATTTCAACATCGGAATCTTGTAACATTCATAGGTTTCTGCTTGAAAGATGAAGAGAAGATACTGATATATGAATATGTACCAAATGGAAGCCTTGATTACTTTTTATTTGATACTCAGCAACAAAAGTTGTTAAATTGGTCTCAGCGTTATAAAATTATAAAAGGAGTTGCACGAGGAATTCATTATTTACATGAGCATTCTCGACCCAAAATTATTCATCGTGATCTTAAACCAAGTAATGTCCTGTTAGATACAAGTATGAATCCAAAGATTTCGGACTTTGGCATAGCTAGAATTGTGGAAATGGACCGAGACCAAGAAATTACAAACAAAATTGTTGGGACATTTGGTTATATGTCTCCAGAATATGCAATGCTTGGATATTTTTCCGAAAAATCAGATATTTTCAGTTTTGGAGTTATGATTCTAGGAATTGTTACGGGGAAAAAGATTTTAACTTCTTATGATTGTTATCATCTTGCTTCAGGCCTACTAAATTATGTTTGGGAAAAGTGGACAGAAAACAAAGCATTAAGCATTTTGGACCAAAAAATAAAAGAAAATTATCTTGAAATTGAAGTGATTAAGTGTATTCAAGTTGGATTATTATGTGTTCAAGAAAATCCAGATGTTAGACCTCCAATGATAACAATTATTTCATATCTTGATAACCACTTAATTGAAATGCCATCTCCACAAGAGCCAGCATTTATGTTACATAGAAGAATAATTGATCAGGTACAAGTAGTTGGTGGTGCGTCAAGCTTTGATCATATCAACAATTTTACGCCATCCTCTATCAATGAGATGTCTATAAGTGAAGATCTTTCTAGATACATGCAGACACGAGAAGATCCAACACAAAAAAGAGGGAAATAG 2808 0.391 MAFSNLGFLFILIIFVHVDADDFHSSGSYCSSLNKTTPNSPFQLNLKTLFKYLSSNATTGNKEFYSTKVLGTNHFDTIYGLYLCRGDLPSQLCGKCISEATHSYLFPDPNQGIFDCSSSREGGISYDECMVQYSNNFTYFSAVDLTPSSSSCLSSNMSATFMNLVFDTLNKIADKASQGSTEKYATKQVRISGFRSLYSLAQCTPNLSSQDCRTCLGNMIKQVKQECGGNEATSSSRSCNLKYAMYPFYRESKSLAPVGLIPITNLSNDFGYLSHNCSTSTNETIIKNSQFESNLRNLLSSLSSNATNKIGFYKTTIGGGESPSDTVTGLFMCRGDVSLSLCQLCVQTAAKRIHSECSSSKEAIIWYTHCLLRYSYRSPLSTWNDTSPMFHEFNIANTSNLNREQQNSFTLTLVSTLSDITNMKEESTTKNYVTATAKLNGVQTLYALGQCTPDLNSGDCSSCLQNIFLYEIPWCCLSSPEGKVFYPSCYIMFGLSKFHGDDDRVQTPSQASLPPGATGGKRNGRYQKKILLIVVPTIVAGMLFLCSGWHLLRRKESKKYKTILRENIFGDEGSTLEPLQMDLAIIEAATNNFSTENLIGKGGFGNVYKGILSDGRHVAVKRLSKISKQGIKEFKNEVLLIAKFQHRNLVTFIGFCLKDEEKILIYEYVPNGSLDYFLFDTQQQKLLNWSQRYKIIKGVARGIHYLHEHSRPKIIHRDLKPSNVLLDTSMNPKISDFGIARIVEMDRDQEITNKIVGTFGYMSPEYAMLGYFSEKSDIFSFGVMILGIVTGKKILTSYDCYHLASGLLNYVWEKWTENKALSILDQKIKENYLEIEVIKCIQVGLLCVQENPDVRPPMITIISYLDNHLIEMPSPQEPAFMLHRRIIDQVQVVGGASSFDHINNFTPSSINEMSISEDLSRYMQTREDPTQKRGK* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3110 935 Gene3D - 270 378 IPR038408 -
Amo18g3110 935 Gene3D - 25 137 IPR038408 -
Amo18g3110 935 Gene3D - 391 498 IPR038408 -
Amo18g3110 935 Gene3D - 147 248 IPR038408 -
Amo18g3110 935 ProSiteProfiles Gnk2-homologous domain profile. 391 498 IPR002902 -
Amo18g3110 935 Pfam Salt stress response/antifungal 157 244 IPR002902 -
Amo18g3110 935 Pfam Salt stress response/antifungal 402 493 IPR002902 -
Amo18g3110 935 Pfam Salt stress response/antifungal 30 135 IPR002902 -
Amo18g3110 935 Pfam Salt stress response/antifungal 277 375 IPR002902 -
Amo18g3110 935 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 18 259 - -
Amo18g3110 935 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 267 503 - -
Amo18g3110 935 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 522 907 - -
Amo18g3110 935 Gene3D Phosphorylase Kinase; domain 1 554 668 - -
Amo18g3110 935 Gene3D Transferase(Phosphotransferase) domain 1 669 876 - -
Amo18g3110 935 SUPERFAMILY Protein kinase-like (PK-like) 577 889 IPR011009 -
Amo18g3110 935 ProSiteProfiles Protein kinase domain profile. 593 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g3110 935 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 259 - -
Amo18g3110 935 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 267 503 - -
Amo18g3110 935 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 522 907 - -
Amo18g3110 935 CDD STKc_IRAK 599 867 - -
Amo18g3110 935 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
Amo18g3110 935 ProSiteProfiles Gnk2-homologous domain profile. 24 138 IPR002902 -
Amo18g3110 935 ProSiteProfiles Gnk2-homologous domain profile. 273 379 IPR002902 -
Amo18g3110 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 714 726 IPR008271 GO:0004672|GO:0006468
Amo18g3110 935 SMART serkin_6 593 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g3110 935 ProSiteProfiles Gnk2-homologous domain profile. 142 248 IPR002902 -
Amo18g3110 935 Pfam Protein kinase domain 594 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3110 Amo-Chr18 130086111 130091891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3110 249 916 Receptor kinase-like Gene Family AT4G05200 41.888 2.35e-169 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g3110 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3110 - - gmx:100785282 945.266