Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3106 ATGGGTTCTTCAGTTGGAGGAAGCAACAGCAACAACGCAGGCGTGGAGTGGCACGTGCGCCCTTCCAACCCTAAGAACCCCATCGTTTTTTTCGATGTCACCATCGGTAACATACCTGCTGGCAGGATCAAGATGGAGCTCTTCGCTGATATTGCCCCCAAAACCGCTGAGAATTTCAGGCAGTTCTGCACTGGGGAATACAGGAAAGCAGGACTACCTGTCGGCTACAAGGGTAGTCAATTTCATAGAGTTATTAAGGATTTTATGATTCAGGCTGGTGATTTCATTAAGGGTGATGGCAGTGGATGTGTCTCTATCTATGGACACAAGTTTGATGATGAAAATTTTATTGCCAAGCATACTGGCCCTGGTCTTCTTTCAATGGCAAACAGTGGAGTTAACACCAATGGTTGTCAGTTCTTCATAACTTGTTCAAAATGTGACTGGCTTGACAACAAGCATGTGGTTTTTGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTCCGGAAGATCGAGAATGTCGCAACTGGACCCAATAACCGGCCGAAATTAGCTTGTGTCATTGCTGAATGTGGTGAAATGTAA 585 0.4564 MGSSVGGSNSNNAGVEWHVRPSNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPVGYKGSQFHRVIKDFMIQAGDFIKGDGSGCVSIYGHKFDDENFIAKHTGPGLLSMANSGVNTNGCQFFITCSKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3106 194 PIRSF Peptidylpro_ismrse 14 194 IPR024936 GO:0003755
Amo18g3106 194 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 30 193 IPR002130 GO:0000413|GO:0003755
Amo18g3106 194 Gene3D - 16 194 IPR029000 -
Amo18g3106 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Amo18g3106 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Amo18g3106 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 152 167 IPR002130 GO:0000413|GO:0003755
Amo18g3106 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 93 IPR002130 GO:0000413|GO:0003755
Amo18g3106 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 139 IPR002130 GO:0000413|GO:0003755
Amo18g3106 194 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 20 194 - -
Amo18g3106 194 SUPERFAMILY Cyclophilin-like 17 194 IPR029000 -
Amo18g3106 194 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 192 IPR002130 GO:0000413|GO:0003755
Amo18g3106 194 CDD cyclophilin_ABH_like 27 192 - -
Amo18g3106 194 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 20 194 - -
Amo18g3106 194 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 76 93 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3106 Amo-Chr18 130043504 130050062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3106 23 191 U-box Gene Family AT5G67530 42.105 1.82e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3106 K09567 - zju:107428673 376.326