Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3092 ATGCATCCATCCCTAATATCTCGCAGGGGCTGGAAAAGGCTTTTGTTGTGGCCGCTGTTGTTTATCTACTTGATAAGCAAACGTAGAAACCGAGGCTGGGAATATAGGTTGAGGCTGTTGCAGATTGCTTTTAATAGCATGGCATCAAGTAATCCATTCTTTGACGATATAAGGACCAAAACTGAAGTTGATCCCCCTCAAAATGAGGAGGCAACAGATGTTAGTGAATTAGTAAATGATCCTGCCCTAACTTCTCTCAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGTCCTGTATGCCTGAATGCAATGTACCCTCCAATCCATCAGTGTTCAAATGGCCACACGATATGCTCAGGTTGCAAACCAAGGGTCCACAATCGGTGCCCTACTTGTAGGCATGAGCTTGGCAACATCAGATGTTTAGCACTAGAGAAGGTGGCTGCATCTTTGGAACTTCCTTGTAAATATCAAGGTTTTGGGTGCATTGGTATCTATCCATATTATAGCAAGCTGAAACACGAATCCCAGTGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCTCAGCTATGGGTGATATACCCTACTTGGTGGCCCATTTGAAAGATGATCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCATCGTTATGTAAAATCAAATCCACAAGAGGTTGAAAATGCCACATGGATGCTCACGGTTTTCAGCTGCTTTGGTCAGTATTTTTGTCTACACTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGATTTATGGGTGATGATAACGAGGCAAAGAATTATAGCTACAGTCTAGAAGTGGGTGGAAATGGGAGGAAAATGATTTGGCAGGGTGTTCCTAGAAGCATTAGGGACAGCCATCGCAAGGTTCGTGACAGTTTTGACGGTCTCATAATTCAGAGGAATATGGCTCTATTCTTCTCCGGCGGCGACAGGAAAGAATTAAAGCTAAGGGTTACCGGTAGGATCTGGAAAGAACAGTGA 1053 0.434 MHPSLISRRGWKRLLLWPLLFIYLISKRRNRGWEYRLRLLQIAFNSMASSNPFFDDIRTKTEVDPPQNEEATDVSELVNDPALTSLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSAMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3092 350 SUPERFAMILY TRAF domain-like 155 347 - -
Amo18g3092 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 55 350 - -
Amo18g3092 350 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 55 350 - -
Amo18g3092 350 ProSiteProfiles Zinc finger RING-type profile. 102 138 IPR001841 -
Amo18g3092 350 CDD RING-HC_SIAHs 100 138 - -
Amo18g3092 350 CDD Sina 216 344 - -
Amo18g3092 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 210 IPR013083 -
Amo18g3092 350 ProSiteProfiles Zinc finger SIAH-type profile. 155 215 IPR013010 GO:0008270
Amo18g3092 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 153 IPR013083 -
Amo18g3092 350 Pfam Seven in absentia protein family 144 343 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo18g3092 350 SUPERFAMILY RING/U-box 94 142 - -
Amo18g3092 350 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 211 343 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3092 Amo-Chr18 129764271 129767902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3092 93 350 C3H Transcription Factor Family AT2G41980 79.070 3.89e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3092 K04506 - gmx:100793457 627.476