Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3072 ATGAACATGTTAGGCCTGAGAGACCTAGTTTTCATAGCACCAACCCATTCCCTTCACCATCATCACCAACAAGGCCAAACCATAATCTCACAAGACAACCACCATAGCCATGGCCATACCAACACCACCAACAACAACGACAATAACAATAACAATAACCTTCCTTTTCCTCCATCATCACTCAGCGTTGGCCTTGGAATCTTCCCCCTCATAACCGCCACACCCTGCATGCCACAAGATAACAATAACAACGTTCACCATGACCAACAACACCTTCTTGTTGGGACCAACACCACCACCACCACCAATAACAGTTACTGGAACCTCAAGATGTGTCCTGAAGTGTCAGAACACGACGGCGGCGGTGGTGATGGAAACAACAACGGAGACGGTGGTGGTGGTAGTATCTATGGCCCTGAATTCAGGGTGTGCCAGGATTGTGGCAACAGGGCAAAGAAAGATTGCAGTTACAAGAGGTGCAGGACTTGTTGCAAGGGGCGTGGATATGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGTGTCGCATCGCCGGGCACGTGATATGGCCGTTGTTGCTGCTAGTGATGGTGGTGGTGCTGCTGCTGCTCTTGGGGCTAATAAGAGGCTTAGAGCTTTTGGGTCATCACAAACAACTACAACTACTAATACCTCTCATAGTTCAACTTCTAATGCTACCACAACTAAGAGTTTGGATTCTACCTCTTGTCACCAGGATGCTGAATTCAAACAATCTTTACCGAGCCACGTTCGCGCCCCGGCGGCGTTTAGGTGCCACAGAGTGTCTGCTATTAGCAATGGCGAAGATGAAATTACATACTTGGCCACTGTCCACATTTGTGGCCATGTGTTCAAAGGGTTTCTTTATGATCAAGGTGCTGATGGCAAGAATGATGAAGTTCCTTGTGTTTCAGTGTTGCAACTTGGAAACAGTGGGAAGAACAACAACAATGGGGAATGTTCCTCTCCAACTCCAATTGGGGTTCCAATTAGTGCCTACCCTGCTTCTGCTTGCTGA 1041 0.4832 MNMLGLRDLVFIAPTHSLHHHHQQGQTIISQDNHHSHGHTNTTNNNDNNNNNNLPFPPSSLSVGLGIFPLITATPCMPQDNNNNVHHDQQHLLVGTNTTTTTNNSYWNLKMCPEVSEHDGGGGDGNNNGDGGGGSIYGPEFRVCQDCGNRAKKDCSYKRCRTCCKGRGYDCSTHVKSTWVPVSHRRARDMAVVAASDGGGAAAALGANKRLRAFGSSQTTTTTNTSHSSTSNATTTKSLDSTSCHQDAEFKQSLPSHVRAPAAFRCHRVSAISNGEDEITYLATVHICGHVFKGFLYDQGADGKNDEVPCVSVLQLGNSGKNNNNGECSSPTPIGVPISAYPASAC* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3072 346 MobiDBLite consensus disorder prediction 17 57 - -
Amo18g3072 346 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 346 IPR007818 GO:0003700|GO:0006355
Amo18g3072 346 Pfam Domain of unknown function (DUF702) 143 302 - -
Amo18g3072 346 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 346 - -
Amo18g3072 346 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 143 185 IPR006510 -
Amo18g3072 346 MobiDBLite consensus disorder prediction 216 238 - -
Amo18g3072 346 MobiDBLite consensus disorder prediction 19 57 - -
Amo18g3072 346 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 254 300 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3072 Amo-Chr18 129519095 129524857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3072 1 331 C2H2 Transcription Factor Family AT5G12330 35.714 2.84e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo18g3072 DUF702 1.3e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3072 - - adu:107462849 572.007