Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3063 ATGACTTCCTTCCGAAACTGTGTTAATGGCGGTTGCTCTCTTGGTCCAAAGGAGAGACTAATGAATCTGATGAATCGATCTGAAAACAAGTTTTGTGCTGATTGTGGAACTCCAGATCCAAAATGGGCATCTACAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCGGGCGTTCATAGAAGCTTAGGAGTCCACATAACAAAGGTTCTATCGTTGAAGCTCGATGATTGGACAGAAGAAGAAGTTGATACATTGCTCAATTTTGGAGGAAACACAACACTAAACAAGAAGTATGAAGCTTGCCTCCCACCTAACATTAAAAAACCAGACCCAGATTCATCAATTGAGGAACGCTCTGACTATATAAGGCGAAAGTATGAGTTGTTGCAATTTACTGGTGGTGACAACAAATCACAACCTTGTCAAGCGAGTAATTCATCCCCGGTTCAAAGTGATTCTCCTTCATTCAGTGATTCTCCGATGGACAAGAAGCAACACGAAAAACATAAACATCGAATTGGGAATGCATTGCGCCATAATTGGGGAAAGAAAGATCATGAGAATAAAGCTCCAAAGAAAACCAACTCATCATTGGCAGGTATGGTTGAATTTGTTGGATTAATTAAGGTTAATGTGGTAAAAGGCACTAACTTGGTTGTTCGAGATGTAGTGTCTAGTGACCCTTATGTTGTCCTTTCTTTGGGTGACCAATCAGTAAAAACACGTGTCATAAAGAAGAGTTTGAATCCAGTGTGGAATGAGAGCCTAATGTTGTCAATTCCAGAAAACATTCCTCCCCTTAAAGTGTGTGTATATGATAAGGACAAATTTTCAAACGATGATTTTATGGGTGAGGCTGAAATAGACATTGAACCTCTAGTGATAGCTACAAAAGAATATGAGGAGTCTAAAAGCTATGAGCATATGCAACAACAACATGGGGGATGTGGTTCAATCACAGAAAACACTTCCATTTGTGAAGATGATGCTAATGCCAATCACAAAGGAGAGATGAAACAACATTTCTCAATTAGGTTACAAAATGTTGAGAGTGGTGTGTTAGAGATTGAGATTGAATGTGTTCCTCTTACTCAATAA 1098 0.3889 MTSFRNCVNGGCSLGPKERLMNLMNRSENKFCADCGTPDPKWASTSLGVFICIKCSGVHRSLGVHITKVLSLKLDDWTEEEVDTLLNFGGNTTLNKKYEACLPPNIKKPDPDSSIEERSDYIRRKYELLQFTGGDNKSQPCQASNSSPVQSDSPSFSDSPMDKKQHEKHKHRIGNALRHNWGKKDHENKAPKKTNSSLAGMVEFVGLIKVNVVKGTNLVVRDVVSSDPYVVLSLGDQSVKTRVIKKSLNPVWNESLMLSIPENIPPLKVCVYDKDKFSNDDFMGEAEIDIEPLVIATKEYEESKSYEHMQQQHGGCGSITENTSICEDDANANHKGEMKQHFSIRLQNVESGVLEIEIECVPLTQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3063 365 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Amo18g3063 365 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Amo18g3063 365 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Amo18g3063 365 Pfam C2 domain 207 296 IPR000008 -
Amo18g3063 365 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Amo18g3063 365 CDD ArfGap 20 126 - -
Amo18g3063 365 SMART C2_3c 207 302 IPR000008 -
Amo18g3063 365 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 203 300 IPR035892 -
Amo18g3063 365 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 365 IPR044518 GO:0005096|GO:0005543
Amo18g3063 365 SMART arf_gap_3 18 139 IPR001164 GO:0005096
Amo18g3063 365 MobiDBLite consensus disorder prediction 133 158 - -
Amo18g3063 365 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Amo18g3063 365 Gene3D Arf GTPase activating protein 14 139 IPR038508 -
Amo18g3063 365 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Amo18g3063 365 Gene3D C2 domain 205 359 IPR035892 -
Amo18g3063 365 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 13 365 - -
Amo18g3063 365 MobiDBLite consensus disorder prediction 133 193 - -
Amo18g3063 365 MobiDBLite consensus disorder prediction 178 192 - -
Amo18g3063 365 ProSiteProfiles C2 domain profile. 189 304 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3063 Amo-Chr18 129422568 129433364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3063 11 365 C2H2 Transcription Factor Family AT4G21160 44.568 7.50e-104 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3063 K12486 - gmx:100789552 447.588